HL_5NG8_128

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAUAAGG

Length

8 nucleotides

Bulged bases

5NG8|1|BA|U|1002, 5NG8|1|BA|G|1005

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_128 not in the Motif Atlas

Geometric match to HL_4WF9_027

Geometric discrepancy: 0.0943

The information below is about HL_4WF9_027

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

397

Unit IDs

5NG8|1|BA|U|999
5NG8|1|BA|G|1000
5NG8|1|BA|A|1001
5NG8|1|BA|U|1002
5NG8|1|BA|A|1003
5NG8|1|BA|A|1004
5NG8|1|BA|G|1005
5NG8|1|BA|G|1006

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BB

5S ribosomal RNA; 5S rRNA

Chain BK

50S ribosomal protein L16