HL_5NG8_158

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

CGCAUGGAAG

Length

10 nucleotides

Bulged bases

5NG8|1|BA|C|2433

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_158 not in the Motif Atlas

Geometric match to HL_7A0S_058

Geometric discrepancy: 0.1245

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

5NG8|1|BA|C|2431
5NG8|1|BA|G|2432
5NG8|1|BA|C|2433
5NG8|1|BA|A|2434
5NG8|1|BA|U|2435
5NG8|1|BA|G|2436
5NG8|1|BA|G|2437
5NG8|1|BA|A|2438
5NG8|1|BA|A|2439
5NG8|1|BA|G|2440

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L15