HL_5NG8_177

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_177 not in the Motif Atlas

Geometric match to HL_5J7L_007

Geometric discrepancy: 0.1158

The information below is about HL_5J7L_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

5NG8|1|Ba|U|304
5NG8|1|Ba|G|305
5NG8|1|Ba|A|306
5NG8|1|Ba|G|307
5NG8|1|Ba|A|308
5NG8|1|Ba|G|309

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Be

30S ribosomal protein S5

Chain Bq

30S ribosomal protein S17