HL_5NG8_178

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_178 not in the Motif Atlas

Geometric match to HL_5J7L_008

Geometric discrepancy: 0.1518

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NG8|1|Ba|A|328
5NG8|1|Ba|A|329
5NG8|1|Ba|C|330
5NG8|1|Ba|U|331
5NG8|1|Ba|G|332
5NG8|1|Ba|A|333
5NG8|1|Ba|G|334
5NG8|1|Ba|A|335
5NG8|1|Ba|C|336
5NG8|1|Ba|A|337
5NG8|1|Ba|C|338
5NG8|1|Ba|G|339
5NG8|1|Ba|G|340
5NG8|1|Ba|U|341

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bp

30S ribosomal protein S16

Chain Bt

30S ribosomal protein S20