HL_5NG8_200

3D structure

PDB id

5NG8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

The cryo-EM structure of hibernating 100S ribosome dimer from pathogenic Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

6.76 Å

Loop

Sequence

GAUCAGCAUGC

Length

11 nucleotides

Bulged bases

5NG8|1|Ba|U|1374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NG8_200 not in the Motif Atlas

Geometric match to HL_4LFB_030

Geometric discrepancy: 0.1408

The information below is about HL_4LFB_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_86432.1

Basepair signature

cWW-tWH-tWH-F-F-F

Number of instances in this motif group

5

Unit IDs

5NG8|1|Ba|G|1366
5NG8|1|Ba|A|1367
5NG8|1|Ba|U|1368
5NG8|1|Ba|C|1369
5NG8|1|Ba|A|1370
5NG8|1|Ba|G|1371
5NG8|1|Ba|C|1372
5NG8|1|Ba|A|1373
5NG8|1|Ba|U|1374
5NG8|1|Ba|G|1375
5NG8|1|Ba|C|1376

Current chains

Chain Ba

16S ribosomal RNA

Nearby chains

Chain Bi

30S ribosomal protein S9

Chain Bj

30S ribosomal protein S10

Chain Bn

30S ribosomal protein S14 type Z