HL_5NGM_004

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGUUAUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_004 not in the Motif Atlas

Homologous match to HL_4WF9_004

Geometric discrepancy: 0.2695

The information below is about HL_4WF9_004

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_98423.1

Basepair signature

cWW-F

Number of instances in this motif group

10

Unit IDs

5NGM|1|AA|A|136
5NGM|1|AA|G|137
5NGM|1|AA|U|138
5NGM|1|AA|U|139
5NGM|1|AA|A|140
5NGM|1|AA|U|141
5NGM|1|AA|G|142
5NGM|1|AA|U|143

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AR

50S ribosomal protein L23