5NGM Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NGM_102 | 1/AA/59:68 | Pseudoknot with intercalation | homologous HL_4WF9_067 HL_17803.1 | |
| HL_5NGM_002 | 1/AA/87:95 | No text annotation | homologous HL_7RQB_002 NA | |
| HL_5NGM_003 | 1/AA/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_5NGM_004 | 1/AA/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_5NGM_005 | 1/AA/159:169 | No text annotation | ||
| HL_5NGM_006 | 1/AA/197:204 | No text annotation | geometric HL_5J7L_139 NA | |
| HL_5NGM_007 | 1/AA/228:233 | No text annotation | homologous HL_4WF9_007 HL_51020.1 | |
| HL_5NGM_008 | 1/AA/249:255 | No text annotation | homologous HL_7A0S_008 HL_76371.1 | |
| HL_5NGM_010 | 1/AA/348:355 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5NGM_011 | 1/AA/362:366 | No text annotation | homologous HL_4WF9_011 HL_75660.6 | |
| HL_5NGM_012 | 1/AA/370:378 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5NGM_103 | 1/AA/428:438 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_5NGM_014 | 1/AA/456:463 | No text annotation | homologous HL_7RQB_014 NA | |
| HL_5NGM_015 | 1/AA/508:513 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_5NGM_016 | 1/AA/533:538 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5NGM_017 | 1/AA/587:594 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_5NGM_018 | 1/AA/609:618 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.1 | |
| HL_5NGM_019 | 1/AA/655:661 | No text annotation | geometric HL_5U3G_001 NA | |
| HL_5NGM_020 | 1/AA/674:679 | GNRA | homologous HL_5J7L_152 NA | |
| HL_5NGM_021 | 1/AA/686:692 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5NGM_022 | 1/AA/757:764 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5NGM_023 | 1/AA/789:798 | No text annotation | homologous HL_4WF9_023 HL_50204.1 | |
| HL_5NGM_104 | 1/AA/824:830 | No text annotation | homologous HL_4WF9_024 HL_92935.1 | |
| HL_5NGM_025 | 1/AA/871:876 | No text annotation | homologous HL_4WF9_025 HL_27530.1 | |
| HL_5NGM_027 | 1/AA/999:1006 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_5NGM_028 | 1/AA/1022:1029 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_5NGM_031 | 1/AA/1260:1265 | GNRA | homologous HL_4WF9_031 HL_34789.1 | |
| HL_5NGM_032 | 1/AA/1318:1326 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_5NGM_033 | 1/AA/1361:1367 | No text annotation | homologous HL_7RQB_034 NA | |
| HL_5NGM_034 | 1/AA/1400:1405 | GNRA | homologous HL_5J7L_167 NA | |
| HL_5NGM_035 | 1/AA/1426:1435 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_5NGM_036 | 1/AA/1535:1541 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_5NGM_037 | 1/AA/1612:1615 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_5NGM_038 | 1/AA/1656:1663 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5NGM_039 | 1/AA/1673:1681 | GNRA with extra cWW | homologous HL_4WF9_039 HL_45359.1 | |
| HL_5NGM_040 | 1/AA/1735:1740 | UNCG | geometric HL_4WF9_040 HL_61337.1 | |
| HL_5NGM_042 | 1/AA/1779:1783 | No text annotation | homologous HL_4WF9_042 HL_80709.4 | |
| HL_5NGM_043 | 1/AA/1803:1815 | No text annotation | homologous HL_7A0S_045 HL_50951.1 | |
| HL_5NGM_044 | 1/AA/1833:1838 | GNRA | homologous HL_7RQB_046 NA | |
| HL_5NGM_045 | 1/AA/1891:1905 | No text annotation | ||
| HL_5NGM_105 | 1/AA/1977:1983 | No text annotation | ||
| HL_5NGM_048 | 1/AA/2054:2063 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_5NGM_050 | 1/AA/2236:2242 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_5NGM_051 | 1/AA/2275:2283 | No text annotation | homologous HL_5J7L_186 NA | |
| HL_5NGM_052 | 1/AA/2291:2303 | No text annotation | homologous HL_4WF9_050 HL_02042.1 | |
| HL_5NGM_112 | 1/AA/2331:2339 | No text annotation | ||
| HL_5NGM_054 | 1/AA/2351:2358 | Pseudoknot geometry | homologous HL_4WF9_052 HL_52651.1 | |
| HL_5NGM_055 | 1/AA/2382:2389 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_5NGM_056 | 1/AA/2401:2406 | GNRA | homologous HL_5J7L_191 NA | |
| HL_5NGM_057 | 1/AA/2431:2440 | No text annotation | homologous HL_7A0S_058 HL_51853.1 | |
| HL_5NGM_058 | 1/AA/2498:2506 | No text annotation | homologous HL_4WF9_056 HL_52011.1 | |
| HL_5NGM_059 | 1/AA/2555:2562 | GNRA variation | homologous HL_5J7L_194 NA | |
| HL_5NGM_060 | 1/AA/2578:2584 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5NGM_061 | 1/AA/2621:2626 | GNRA | homologous HL_5J7L_196 NA | |
| HL_5NGM_062 | 1/AA/2685:2690 | GNRA | homologous HL_5J7L_197 NA | |
| HL_5NGM_063 | 1/AA/2728:2733 | Ribsomal LSU H95 | homologous HL_5J7L_198 NA | |
| HL_5NGM_064 | 1/AA/2772:2786 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_5NGM_066 | 1/AA/2839:2847 | No text annotation | homologous HL_4WF9_064 HL_37889.1 | |
| HL_5NGM_067 | 1/AA/2876:2881 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5NGM_107 | 1/AB/32:46 | No text annotation | homologous HL_9DFE_067 HL_97756.3 | |
| HL_5NGM_068 | 1/AB/36:42 | No text annotation | homologous HL_7RQB_070 NA | |
| HL_5NGM_069 | 1/AB/83:88 | No text annotation | geometric HL_7A0S_007 HL_51020.1 | |
| HL_5NGM_070 | 1/Aa/13:23 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5NGM_075 | 1/Aa/267:275 | GNRA related | homologous HL_5J7L_006 NA | |
| HL_5NGM_076 | 1/Aa/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5NGM_077 | 1/Aa/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5NGM_078 | 1/Aa/350:355 | UNCG | homologous HL_6CZR_080 NA | |
| HL_5NGM_079 | 1/Aa/386:393 | GNRA with extra cWW | geometric HL_7A0S_056 HL_45359.1 | |
| HL_5NGM_082 | 1/Aa/530:535 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5NGM_083 | 1/Aa/625:631 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5NGM_084 | 1/Aa/697:706 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5NGM_085 | 1/Aa/734:739 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5NGM_086 | 1/Aa/794:804 | No text annotation | homologous HL_4LFB_017 HL_38491.1 | |
| HL_5NGM_088 | 1/Aa/871:876 | GNRA | homologous HL_5J7L_019 NA | |
| HL_5NGM_089 | 1/Aa/906:911 | GNRA | homologous HL_6CZR_091 NA | |
| HL_5NGM_090 | 1/Aa/972:981 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5NGM_093 | 1/Aa/1087:1092 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5NGM_098 | 1/Aa/1324:1333 | T-loop with 3 stacked bulged bases | homologous HL_4LFB_029 HL_93658.1 | |
| HL_5NGM_099 | 1/Aa/1366:1376 | No text annotation | homologous HL_4LFB_030 HL_86432.1 | |
| HL_5NGM_101 | 1/Aa/1526:1531 | GNRA | geometric HL_3NVI_002 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NGM_001 | No text annotation | ||
| HL_5NGM_009 | No text annotation | ||
| HL_5NGM_013 | No text annotation | ||
| HL_5NGM_024 | No text annotation | ||
| HL_5NGM_026 | No text annotation | ||
| HL_5NGM_029 | No text annotation | ||
| HL_5NGM_030 | Mini UNCG | ||
| HL_5NGM_041 | No text annotation | ||
| HL_5NGM_046 | No text annotation | ||
| HL_5NGM_047 | No text annotation | ||
| HL_5NGM_106 | No text annotation | ||
| HL_5NGM_049 | No text annotation | ||
| HL_5NGM_053 | No text annotation | ||
| HL_5NGM_065 | No text annotation | ||
| HL_5NGM_071 | No text annotation | ||
| HL_5NGM_072 | GNRA | ||
| HL_5NGM_073 | No text annotation | ||
| HL_5NGM_074 | No text annotation | ||
| HL_5NGM_080 | No text annotation | ||
| HL_5NGM_081 | No text annotation | ||
| HL_5NGM_087 | No text annotation | ||
| HL_5NGM_108 | No text annotation | ||
| HL_5NGM_109 | No text annotation | ||
| HL_5NGM_091 | No text annotation | ||
| HL_5NGM_092 | No text annotation | ||
| HL_5NGM_094 | T-loop related | ||
| HL_5NGM_095 | No text annotation | ||
| HL_5NGM_096 | No text annotation | ||
| HL_5NGM_097 | GNRA | ||
| HL_5NGM_110 | No text annotation | ||
| HL_5NGM_111 | No text annotation | ||
| HL_5NGM_100 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NGM_001 | 1/AA/24:30, 1/AA/555:561 | Triple sheared with non-canonical cWW | homologous IL_4WF9_001 IL_22311.1 | |
| IL_5NGM_002 | 1/AA/36:37, 1/AA/488:490 | Single bulged A | homologous IL_7RQB_002 NA | |
| IL_5NGM_003 | 1/AA/42:44, 1/AA/480:483 | Minor groove platform with extra cWW | homologous IL_4WF9_003 IL_82096.1 | |
| IL_5NGM_183 | 1/AA/81:85, 1/AA/97:104 | Kink-turn | homologous IL_9DFE_004 IL_54465.1 | |
| IL_5NGM_005 | 1/AA/152:153, 1/AA/175:177 | Major groove platform | geometric IL_3NKB_002 NA | |
| IL_5NGM_007 | 1/AA/186:187, 1/AA/215:217 | Single stack bend | homologous IL_5J7L_249 NA | |
| IL_5NGM_008 | 1/AA/190:197, 1/AA/204:212 | 9x8 Sarcin-Ricin; G-bulge | homologous IL_4WF9_008 IL_93502.1 | |
| IL_5NGM_009 | 1/AA/241:248, 1/AA/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_5NGM_010 | 1/AA/305:306, 1/AA/409:412 | Minor groove platform | geometric IL_7RQB_073 NA | |
| IL_5NGM_012 | 1/AA/319:327, 1/AA/399:400 | No text annotation | ||
| IL_5NGM_013 | 1/AA/336:338, 1/AA/386:390 | No text annotation | homologous IL_4WF9_014 IL_76658.1 | |
| IL_5NGM_014 | 1/AA/527:530, 1/AA/541:554 | No text annotation | homologous IL_4WF9_015 IL_44923.1 | |
| IL_5NGM_015 | 1/AA/581:584, 1/AA/597:600 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
| IL_5NGM_016 | 1/AA/607:609, 1/AA/618:620 | Isolated non-canonical cWW pair | geometric IL_5J7L_257 NA | |
| IL_5NGM_017 | 1/AA/638:640, 1/AA/705:707 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_5NGM_018 | 1/AA/649:653, 1/AA/663:667 | AAA cross-strand stack | homologous IL_4WF9_019 IL_66798.3 | |
| IL_5NGM_019 | 1/AA/717:719, 1/AA/851:853 | Isolated non-canonical cWW pair | geometric IL_4WF9_020 IL_01003.1 | |
| IL_5NGM_020 | 1/AA/719:723, 1/AA/844:851 | tHW-tHW cross-strand stack | homologous IL_4WF9_021 IL_73855.1 | |
| IL_5NGM_021 | 1/AA/742:743, 1/AA/808:810 | Single bulged A | homologous IL_4WF9_022 IL_14190.1 | |
| IL_5NGM_022 | 1/AA/747:748, 1/AA/773:775 | Single bulged G | geometric IL_5J7L_262 NA | |
| IL_5NGM_023 | 1/AA/748:752, 1/AA/769:773 | Triple sheared | homologous IL_7RQB_021 NA | |
| IL_5NGM_024 | 1/AA/783:785, 1/AA/802:803 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_5NGM_025 | 1/AA/820:822, 1/AA/832:836 | Multiple bulged bases | homologous IL_5J7L_265 NA | |
| IL_5NGM_026 | 1/AA/881:883, 1/AA/984:987 | No text annotation | geometric IL_8P9A_292 IL_15698.4 | |
| IL_5NGM_027 | 1/AA/889:893, 1/AA/975:978 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_5NGM_028 | 1/AA/897:898, 1/AA/969:971 | No text annotation | ||
| IL_5NGM_029 | 1/AA/901:907, 1/AA/960:966 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_5NGM_030 | 1/AA/907:908, 1/AA/958:960 | Minor groove platform | homologous IL_4WF9_032 IL_34520.1 | |
| IL_5NGM_031 | 1/AA/909:913, 1/AA/954:957 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5NGM_032 | 1/AA/920:924, 1/AA/943:947 | Double sheared with non-canonical cWW | homologous IL_5J7L_274 NA | |
| IL_5NGM_033 | 1/AA/1038:1040, 1/AA/1203:1204 | Single bulged C | homologous IL_4WF9_035 IL_05642.1 | |
| IL_5NGM_034 | 1/AA/1042:1046, 1/AA/1197:1201 | UAA/GAN | homologous IL_4WF9_036 IL_08938.1 | |
| IL_5NGM_035 | 1/AA/1048:1055, 1/AA/1194:1195 | SSU/LSU pseudoknot | homologous IL_5J7L_278 NA | |
| IL_5NGM_036 | 1/AA/1055:1057, 1/AA/1193:1194 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_5NGM_037 | 1/AA/1062:1068, 1/AA/1184:1188 | Kink-turn related | geometric IL_4WF9_039 IL_57188.6 | |
| IL_5NGM_038 | 1/AA/1068:1074, 1/AA/1168:1184 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_5NGM_184 | 1/AA/1075:1077, 1/AA/1166:1167 | Single stack bend | geometric IL_7A0S_005 IL_15011.1 | |
| IL_5NGM_040 | 1/AA/1081:1083, 1/AA/1160:1162 | Isolated non-canonical cWW pair | homologous IL_4WF9_042 IL_01003.1 | |
| IL_5NGM_041 | 1/AA/1235:1237, 1/AA/1285:1288 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_5NGM_042 | 1/AA/1243:1245, 1/AA/1277:1279 | Isolated cWH basepair | homologous IL_4WF9_045 IL_10892.1 | |
| IL_5NGM_043 | 1/AA/1246:1253, 1/AA/1272:1276 | Kink-turn | homologous IL_7RQB_047 NA | |
| IL_5NGM_044 | 1/AA/1257:1259, 1/AA/1266:1268 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_5NGM_045 | 1/AA/1300:1307, 1/AA/2038:2044 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_5NGM_046 | 1/AA/1356:1360, 1/AA/1368:1370 | Major groove minor groove platform with tHH | homologous IL_4WF9_050 IL_06671.1 | |
| IL_5NGM_047 | 1/AA/1388:1392, 1/AA/1413:1417 | UAA/GAN | homologous IL_5J7L_292 NA | |
| IL_5NGM_048 | 1/AA/1394:1398, 1/AA/1407:1411 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_5NGM_186 | 1/AA/1447:1460, 1/AA/1628:1636 | No text annotation | ||
| IL_5NGM_050 | 1/AA/1461:1465, 1/AA/1624:1627 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_5NGM_051 | 1/AA/1476:1480, 1/AA/1604:1608 | No text annotation | homologous IL_4WF9_122 IL_67780.1 | |
| IL_5NGM_052 | 1/AA/1481:1485, 1/AA/1598:1603 | No text annotation | ||
| IL_5NGM_171 | 1/AA/1481:1510, 1/AA/1571:1603 | No text annotation | ||
| IL_5NGM_053 | 1/AA/1485:1511, 1/AA/1570:1598 | No text annotation | ||
| IL_5NGM_172 | 1/AA/1511:1515, 1/AA/1565:1570 | No text annotation | homologous IL_4WF9_116 IL_25186.4 | |
| IL_5NGM_055 | 1/AA/1518:1522, 1/AA/1558:1562 | tSH-tHW-tHS | homologous IL_5J7L_300 NA | |
| IL_5NGM_057 | 1/AA/1532:1534, 1/AA/1542:1543 | No text annotation | ||
| IL_5NGM_058 | 1/AA/1695:1700, 1/AA/2031:2033 | No text annotation | homologous IL_4WF9_062 IL_12566.5 | |
| IL_5NGM_059 | 1/AA/1707:1709, 1/AA/2022:2024 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_5NGM_060 | 1/AA/1710:1713, 1/AA/2020:2021 | Major groove platform; stack outside cWW | homologous IL_7RQB_066 NA | |
| IL_5NGM_174 | 1/AA/1710:1718, 1/AA/2017:2021 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_5NGM_061 | 1/AA/1713:1718, 1/AA/2017:2020 | Intercalated tWH | geometric IL_4WF9_065 IL_28217.1 | |
| IL_5NGM_062 | 1/AA/1730:1735, 1/AA/1740:1746 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5NGM_063 | 1/AA/1756:1759, 1/AA/1770:1773 | No text annotation | ||
| IL_5NGM_064 | 1/AA/1797:1798, 1/AA/2007:2009 | Single bulged A | homologous IL_7A0S_064 IL_14190.1 | |
| IL_5NGM_065 | 1/AA/1825:1831, 1/AA/1840:1848 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5NGM_066 | 1/AA/1864:1867, 1/AA/1929:1930 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5NGM_067 | 1/AA/1868:1869, 1/AA/1925:1928 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5NGM_068 | 1/AA/1873:1876, 1/AA/1920:1921 | No text annotation | ||
| IL_5NGM_069 | 1/AA/1878:1882, 1/AA/1914:1918 | UAA/GAN with extra stack | homologous IL_4WF9_073 IL_89021.3 | |
| IL_5NGM_070 | 1/AA/1883:1887, 1/AA/1909:1913 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5NGM_071 | 1/AA/1961:1972, 1/AA/1988:1991 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_5NGM_072 | 1/AA/2077:2079, 1/AA/2644:2645 | Major groove platform | homologous IL_5J7L_320 NA | |
| IL_5NGM_073 | 1/AA/2081:2083, 1/AA/2639:2642 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_5NGM_074 | 1/AA/2094:2096, 1/AA/2469:2470 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5NGM_075 | 1/AA/2097:2098, 1/AA/2465:2468 | Minor groove platform | homologous IL_7RQB_081 NA | |
| IL_5NGM_076 | 1/AA/2108:2110, 1/AA/2263:2266 | Isolated tHS basepair with bulges | homologous IL_7A0S_077 IL_87316.1 | |
| IL_5NGM_079 | 1/AA/2229:2231, 1/AA/2247:2248 | Single bulged U | homologous IL_5J7L_331 NA | |
| IL_5NGM_080 | 1/AA/2324:2326, 1/AA/2344:2348 | Isolated tHS basepair with bulges | homologous IL_7RQB_088 NA | |
| IL_5NGM_081 | 1/AA/2377:2380, 1/AA/2391:2394 | Double sheared | homologous IL_5J7L_333 NA | |
| IL_5NGM_082 | 1/AA/2428:2430, 1/AA/2441:2442 | Single bulged U | homologous IL_5J7L_334 NA | |
| IL_5NGM_083 | 1/AA/2480:2481, 1/AA/2525:2527 | Single stack bend | geometric IL_4WF9_089 IL_15011.1 | |
| IL_5NGM_084 | 1/AA/2481:2482, 1/AA/2523:2525 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_5NGM_085 | 1/AA/2484:2486, 1/AA/2520:2521 | Major groove platform | geometric IL_4WF9_091 IL_48076.7 | |
| IL_5NGM_086 | 1/AA/2486:2488, 1/AA/2516:2520 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5NGM_087 | 1/AA/2493:2497, 1/AA/2507:2511 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_5NGM_088 | 1/AA/2534:2535, 1/AA/2607:2609 | Major groove platform | homologous IL_7RQB_096 NA | |
| IL_5NGM_089 | 1/AA/2537:2539, 1/AA/2601:2605 | Isolated non-canonical cWW with bulges | homologous IL_4WF9_095 IL_68118.1 | |
| IL_5NGM_090 | 1/AA/2539:2540, 1/AA/2598:2601 | No text annotation | geometric IL_5J7L_341 NA | |
| IL_5NGM_091 | 1/AA/2549:2550, 1/AA/2567:2570 | Major groove platform with intercalation | homologous IL_5J7L_342 NA | |
| IL_5NGM_092 | 1/AA/2618:2619, 1/AA/2628:2630 | Single bulged A | geometric IL_4V9F_090 IL_73464.1 | |
| IL_5NGM_093 | 1/AA/2663:2667, 1/AA/2801:2809 | tSH-tHS-tHW | homologous IL_4WF9_099 IL_04638.4 | |
| IL_5NGM_094 | 1/AA/2679:2685, 1/AA/2690:2695 | Sarcin-Ricin target in LSU H95; G-bulge | geometric IL_7RQB_103 NA | |
| IL_5NGM_095 | 1/AA/2707:2711, 1/AA/2752:2754 | C-loop | homologous IL_5J7L_347 NA | |
| IL_5NGM_096 | 1/AA/2714:2718, 1/AA/2745:2749 | No text annotation | homologous IL_7RQB_105 NA | |
| IL_5NGM_097 | 1/AA/2722:2723, 1/AA/2738:2741 | Multiple bulged bases | homologous IL_5J7L_349 NA | |
| IL_5NGM_098 | 1/AA/2764:2769, 1/AA/2789:2794 | UAA/GAN with extra cWW | homologous IL_5J7L_350 NA | |
| IL_5NGM_099 | 1/AA/2858:2859, 1/AA/2898:2900 | Major groove intercalation | homologous IL_4WF9_106 IL_78536.1 | |
| IL_5NGM_100 | 1/AA/2863:2865, 1/AA/2891:2894 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_5NGM_101 | 1/AA/2867:2872, 1/AA/2885:2889 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_5NGM_102 | 1/AB/15:16, 1/AB/63:65 | Major groove intercalation | homologous IL_4WF9_112 IL_14190.1 | |
| IL_5NGM_103 | 1/AB/21:27, 1/AB/53:58 | No text annotation | ||
| IL_5NGM_104 | 1/AB/28:29, 1/AB/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5NGM_105 | 1/AB/32:36, 1/AB/42:46 | Symmetric double minor groove platform | geometric IL_7RQB_114 NA | |
| IL_5NGM_106 | 1/AB/69:77, 1/AB/94:102 | Bacterial 5S Loop E | homologous IL_7A0S_106 IL_71138.1 | |
| IL_5NGM_107 | 1/AB/78:80, 1/AB/91:93 | Isolated non-canonical cWW pair | homologous IL_7A0S_107 IL_71625.1 | |
| IL_5NGM_108 | 1/Aa/31:33, 1/Aa/560:561 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5NGM_109 | 1/Aa/45:46, 1/Aa/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_5NGM_110 | 1/Aa/48:53, 1/Aa/367:369 | No text annotation | homologous IL_5J7L_003 NA | |
| IL_5NGM_111 | 1/Aa/54:57, 1/Aa/364:366 | No text annotation | ||
| IL_5NGM_112 | 1/Aa/64:67, 1/Aa/102:103 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_5NGM_113 | 1/Aa/68:71, 1/Aa/98:101 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 NA | |
| IL_5NGM_114 | 1/Aa/128:131, 1/Aa/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5NGM_115 | 1/Aa/132:136, 1/Aa/235:238 | Minor groove platform related | homologous IL_5J7L_010 NA | |
| IL_5NGM_116 | 1/Aa/147:153, 1/Aa/168:175 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_5NGM_118 | 1/Aa/250:255, 1/Aa/285:292 | Kink-turn with non-sequential stacking | homologous IL_4LFB_011 IL_46174.4 | |
| IL_5NGM_178 | 1/Aa/257:260, 1/Aa/282:283 | No text annotation | homologous IL_4LFB_012 IL_22002.1 | |
| IL_5NGM_120 | 1/Aa/300:301, 1/Aa/312:316 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5NGM_121 | 1/Aa/375:377, 1/Aa/400:401 | Single bulged U | homologous IL_4LFB_014 IL_97561.1 | |
| IL_5NGM_122 | 1/Aa/379:383, 1/Aa/397:398 | C-loop | geometric IL_5J7L_018 NA | |
| IL_5NGM_123 | 1/Aa/383:384, 1/Aa/395:397 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_5NGM_125 | 1/Aa/454:458, 1/Aa/491:496 | 6x5 Sarcin-Ricin; G-bulge | homologous IL_4LFB_018 IL_82100.1 | |
| IL_5NGM_179 | 1/Aa/458:466, 1/Aa/483:491 | No text annotation | homologous IL_6CZR_360 NA | |
| IL_5NGM_126 | 1/Aa/512:519, 1/Aa/548:549 | SSU/LSU pseudoknot | homologous IL_6CZR_132 NA | |
| IL_5NGM_127 | 1/Aa/523:529, 1/Aa/536:544 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5NGM_128 | 1/Aa/577:583, 1/Aa/889:890 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_5NGM_129 | 1/Aa/588:592, 1/Aa/765:769 | tSH-tHW-tHS | homologous IL_4LFB_023 IL_05821.1 | |
| IL_5NGM_130 | 1/Aa/598:600, 1/Aa/655:657 | Isolated non-canonical cWW pair | geometric IL_4WF9_042 IL_01003.1 | |
| IL_5NGM_131 | 1/Aa/602:604, 1/Aa/652:653 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_5NGM_132 | 1/Aa/605:606, 1/Aa/648:651 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5NGM_133 | 1/Aa/612:620, 1/Aa/636:642 | No text annotation | ||
| IL_5NGM_134 | 1/Aa/662:663, 1/Aa/759:762 | Major groove platform; stack outside cWW | homologous IL_4LFB_027 IL_74641.1 | |
| IL_5NGM_135 | 1/Aa/665:666, 1/Aa/755:757 | Major groove platform | homologous IL_4LFB_028 IL_48076.7 | |
| IL_5NGM_180 | 1/Aa/670:674, 1/Aa/748:751 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5NGM_181 | 1/Aa/681:685, 1/Aa/721:725 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_5NGM_138 | 1/Aa/692:696, 1/Aa/707:714 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5NGM_139 | 1/Aa/782:787, 1/Aa/811:813 | Other IL | geometric IL_4V88_435 NA | |
| IL_5NGM_140 | 1/Aa/787:791, 1/Aa/807:811 | tSH-tHW-tHS | geometric IL_4LFB_033 IL_05821.1 | |
| IL_5NGM_141 | 1/Aa/896:903, 1/Aa/914:919 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5NGM_142 | 1/Aa/931:932, 1/Aa/1403:1405 | Single bulged A | homologous IL_4LFB_035 IL_14190.1 | |
| IL_5NGM_143 | 1/Aa/934:936, 1/Aa/1400:1401 | Single bulged G | homologous IL_4LFB_036 IL_28408.1 | |
| IL_5NGM_144 | 1/Aa/942:944, 1/Aa/1390:1394 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_5NGM_149 | 1/Aa/1062:1067, 1/Aa/1214:1217 | Tandem non-canonical cWW pairs | geometric IL_4V88_473 NA | |
| IL_5NGM_151 | 1/Aa/1071:1072, 1/Aa/1205:1207 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_5NGM_152 | 1/Aa/1072:1074, 1/Aa/1203:1205 | Isolated non-canonical cWW pair | geometric IL_4LFB_047 IL_68118.1 | |
| IL_5NGM_157 | 1/Aa/1409:1411, 1/Aa/1512:1515 | No text annotation | homologous IL_4LFB_056 IL_18228.1 | |
| IL_5NGM_158 | 1/Aa/1411:1414, 1/Aa/1508:1512 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5NGM_159 | 1/Aa/1415:1417, 1/Aa/1505:1507 | Isolated non-canonical cWW pair | geometric IL_5TBW_110 NA | |
| IL_5NGM_160 | 1/Aa/1417:1419, 1/Aa/1502:1505 | No text annotation | geometric IL_4V9F_072 IL_75527.1 | |
| IL_5NGM_161 | 1/Aa/1422:1424, 1/Aa/1497:1499 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5NGM_162 | 1/Aa/1426:1429, 1/Aa/1492:1495 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5NGM_163 | 1/Aa/1434:1437, 1/Aa/1484:1487 | Tandem non-canonical cWW pairs | geometric IL_5LQO_002 NA | |
| IL_5NGM_164 | 1/Aa/1440:1445, 1/Aa/1477:1481 | Triple sheared related | geometric IL_5J7L_063 NA | |
| IL_5NGM_165 | 1/Aa/1445:1447, 1/Aa/1475:1477 | Isolated non-canonical cWW pair | homologous IL_4LFB_063 IL_01003.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NGM_004 | Kink-turn | ||
| IL_5NGM_006 | Isolated cWH basepair | ||
| IL_5NGM_011 | No text annotation | ||
| IL_5NGM_168 | Isolated cWH basepair | ||
| IL_5NGM_169 | Isolated cWS basepair | ||
| IL_5NGM_039 | Other IL | ||
| IL_5NGM_170 | No text annotation | ||
| IL_5NGM_185 | No text annotation | ||
| IL_5NGM_049 | No text annotation | ||
| IL_5NGM_054 | No text annotation | ||
| IL_5NGM_056 | No text annotation | ||
| IL_5NGM_173 | No text annotation | ||
| IL_5NGM_077 | Isolated non-canonical cWW pair | ||
| IL_5NGM_175 | No text annotation | ||
| IL_5NGM_078 | No text annotation | ||
| IL_5NGM_176 | Single stack bend | ||
| IL_5NGM_177 | No text annotation | ||
| IL_5NGM_117 | No text annotation | ||
| IL_5NGM_119 | No text annotation | ||
| IL_5NGM_124 | No text annotation | ||
| IL_5NGM_136 | Partly complementary | ||
| IL_5NGM_137 | No text annotation | ||
| IL_5NGM_145 | No text annotation | ||
| IL_5NGM_146 | Minor groove platform | ||
| IL_5NGM_187 | No text annotation | ||
| IL_5NGM_147 | No text annotation | ||
| IL_5NGM_148 | Single bulged U | ||
| IL_5NGM_150 | Minor groove platform | ||
| IL_5NGM_188 | No text annotation | ||
| IL_5NGM_182 | No text annotation | ||
| IL_5NGM_153 | No text annotation | ||
| IL_5NGM_154 | No text annotation | ||
| IL_5NGM_155 | tSH-tHW-tHS-cWW | ||
| IL_5NGM_156 | No text annotation | ||
| IL_5NGM_166 | No text annotation | ||
| IL_5NGM_167 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NGM_001 | 1/AA/30:31, 1/AA/520:527, 1/AA/554:555 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_5NGM_025 | 1/AA/30:31, 1/AA/520:530, 1/AA/541:555 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_5NGM_026 | 1/AA/32:35, 1/AA/491:507, 1/AA/514:519 | No text annotation | homologous J3_4WF9_012 J3_07616.1 | |
| J3_5NGM_002 | 1/AA/56:57, 1/AA/70:76, 1/AA/109:113 | No text annotation | homologous J3_5J7L_037 NA | |
| J3_5NGM_003 | 1/AA/272:276, 1/AA/295:302, 1/AA/415:416 | No text annotation | homologous J3_7RQB_003 NA | |
| J3_5NGM_004 | 1/AA/728:734, 1/AA/818:820, 1/AA/836:839 | No text annotation | homologous J3_4WF9_002 J3_46658.1 | |
| J3_5NGM_005 | 1/AA/743:745, 1/AA/777:781, 1/AA/805:808 | No text annotation | homologous J3_4WF9_003 J3_69816.1 | |
| J3_5NGM_006 | 1/AA/1335:1340, 1/AA/1669:1671, 1/AA/1683:1686 | No text annotation | homologous J3_4WF9_004 J3_32852.7 | |
| J3_5NGM_007 | 1/AA/1342:1346, 1/AA/1649:1655, 1/AA/1664:1667 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_5NGM_027 | 1/AA/1381:1388, 1/AA/1417:1422, 1/AA/1439:1440 | No text annotation | homologous J3_4WF9_016 J3_94309.1 | |
| J3_5NGM_028 | 1/AA/1468:1473, 1/AA/1611:1612, 1/AA/1615:1621 | No text annotation | homologous J3_5J7L_069 NA | |
| J3_5NGM_008 | 1/AA/2118:2120, 1/AA/2223:2229, 1/AA/2248:2255 | No text annotation | ||
| J3_5NGM_029 | 1/AA/2309:2312, 1/AA/2410:2422, 1/AA/2448:2454 | No text annotation | homologous J3_4WF9_019 J3_39320.1 | |
| J3_5NGM_009 | 1/AA/2322:2324, 1/AA/2348:2350, 1/AA/2359:2364 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_5NGM_010 | 1/AA/2544:2547, 1/AA/2572:2574, 1/AA/2588:2594 | No text annotation | homologous J3_4WF9_009 J3_32601.6 | |
| J3_5NGM_011 | 1/AA/2816:2817, 1/AA/2826:2831, 1/AA/2909:2913 | No text annotation | homologous J3_7RQB_013 NA | |
| J3_5NGM_012 | 1/AA/2834:2835, 1/AA/2851:2856, 1/AA/2902:2906 | No text annotation | homologous J3_7RQB_014 NA | |
| J3_5NGM_013 | 1/AB/9:14, 1/AB/66:68, 1/AB/103:106 | No text annotation | ||
| J3_5NGM_014 | 1/Aa/47:48, 1/Aa/369:375, 1/Aa/401:403 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5NGM_030 | 1/Aa/47:53, 1/Aa/367:375, 1/Aa/401:403 | No text annotation | homologous J3_5J7L_050 NA | |
| J3_5NGM_031 | 1/Aa/142:144, 1/Aa/178:185, 1/Aa/206:229 | No text annotation | ||
| J3_5NGM_015 | 1/Aa/594:596, 1/Aa/659:662, 1/Aa/762:763 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5NGM_032 | 1/Aa/594:596, 1/Aa/659:663, 1/Aa/759:763 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_5NGM_016 | 1/Aa/680:681, 1/Aa/725:733, 1/Aa/740:742 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5NGM_017 | 1/Aa/834:837, 1/Aa/866:870, 1/Aa/877:883 | No text annotation | homologous J3_5J7L_004 NA | |
| J3_5NGM_018 | 1/Aa/945:948, 1/Aa/1354:1360, 1/Aa/1382:1389 | No text annotation | ||
| J3_5NGM_020 | 1/Aa/964:971, 1/Aa/982:993, 1/Aa/1231:1235 | No text annotation | homologous J3_4LFB_004 J3_88451.1 | |
| J3_5NGM_022 | 1/Aa/1074:1079, 1/Aa/1118:1124, 1/Aa/1197:1203 | No text annotation | homologous J3_5J7L_008 NA | |
| J3_5NGM_035 | 1/Aa/1084:1085, 1/Aa/1094:1097, 1/Aa/1110:1113 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J4_5NGM_001 | 1/AA/271:272, 1/AA/416:421, 1/AA/445:452, 1/AA/467:470 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_5NGM_002 | 1/AA/340:344, 1/AA/359:362, 1/AA/366:368, 1/AA/380:384 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5NGM_003 | 1/AA/644:647, 1/AA/669:673, 1/AA/680:683, 1/AA/695:701 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_5NGM_004 | 1/AA/1308:1313, 1/AA/1331:1332, 1/AA/1689:1693, 1/AA/2035:2037 | No text annotation | ||
| J4_5NGM_005 | 1/AA/1347:1351, 1/AA/1375:1380, 1/AA/1441:1442, 1/AA/1641:1648 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_5NGM_006 | 1/AA/1799:1803, 1/AA/1815:1819, 1/AA/1854:1857, 1/AA/2002:2006 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_5NGM_007 | 1/AA/1860:1863, 1/AA/1931:1933, 1/AA/1951:1961, 1/AA/1991:1999 | No text annotation | ||
| J4_5NGM_008 | 1/AA/2312:2317, 1/AA/2369:2374, 1/AA/2397:2399, 1/AA/2408:2410 | No text annotation | ||
| J4_5NGM_009 | 1/AA/2670:2673, 1/AA/2701:2703, 1/AA/2758:2762, 1/AA/2796:2798 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J4_5NGM_010 | 1/Aa/114:122, 1/Aa/246:248, 1/Aa/294:297, 1/Aa/319:320 | No text annotation | ||
| J4_5NGM_011 | 1/Aa/583:585, 1/Aa/772:777, 1/Aa/818:829, 1/Aa/888:889 | No text annotation | homologous J4_5J7L_003 NA | |
| J5_5NGM_001 | 1/AA/47:54, 1/AA/115:120, 1/AA/129:130, 1/AA/149:151, 1/AA/178:180 | No text annotation | homologous J5_4WF9_001 J5_27223.1 | |
| J5_5NGM_002 | 1/AA/627:632, 1/AA/713:716, 1/AA/854:857, 1/AA/1234:1235, 1/AA/1288:1294 | No text annotation | homologous J5_4WF9_004 J5_74302.6 | |
| J5_5NGM_003 | 1/AA/1718:1726, 1/AA/1750:1751, 1/AA/1778:1779, 1/AA/1783:1791, 1/AA/2015:2017 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_5NGM_004 | 1/AA/2084:2091, 1/AA/2473:2480, 1/AA/2527:2534, 1/AA/2609:2615, 1/AA/2633:2638 | No text annotation | ||
| J5_5NGM_005 | 1/AA/2101:2104, 1/AA/2270:2273, 1/AA/2285:2286, 1/AA/2308:2309, 1/AA/2454:2462 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J5_5NGM_006 | 1/Aa/37:41, 1/Aa/410:416, 1/Aa/442:449, 1/Aa/501:512, 1/Aa/549:556 | No text annotation | ||
| J5_5NGM_008 | 1/Aa/54:62, 1/Aa/105:112, 1/Aa/322:324, 1/Aa/345:347, 1/Aa/358:366 | No text annotation | ||
| J6_5NGM_001 | 1/AA/45:47, 1/AA/180:186, 1/AA/217:227, 1/AA/234:238, 1/AA/265:269, 1/AA/472:479 | No text annotation | ||
| J6_5NGM_002 | 1/AA/2101:2104, 1/AA/2270:2273, 1/AA/2285:2286, 1/AA/2308:2312, 1/AA/2410:2422, 1/AA/2448:2462 | No text annotation | ||
| J7_5NGM_001 | 1/AA/862:867, 1/AA/880:881, 1/AA/987:990, 1/AA/1015:1020, 1/AA/1031:1035, 1/AA/1207:1209, 1/AA/1223:1229 | No text annotation | ||
| J10_5NGM_001 | 1/AA/8:15, 1/AA/570:578, 1/AA/603:607, 1/AA/620:622, 1/AA/1299:1300, 1/AA/2044:2050, 1/AA/2067:2070, 1/AA/2652:2657, 1/AA/2815:2816, 1/AA/2913:2914 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NGM_019 | No text annotation | ||
| J3_5NGM_021 | No text annotation | ||
| J3_5NGM_033 | No text annotation | ||
| J3_5NGM_037 | No text annotation | ||
| J3_5NGM_034 | No text annotation | ||
| J3_5NGM_023 | No text annotation | ||
| J3_5NGM_024 | No text annotation | ||
| J3_5NGM_036 | No text annotation | ||
| J5_5NGM_007 | No text annotation |
Coloring options: