HL_5NGM_010

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|A|354

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_010 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1525

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5NGM|1|AA|C|348
5NGM|1|AA|U|349
5NGM|1|AA|G|350
5NGM|1|AA|G|351
5NGM|1|AA|A|352
5NGM|1|AA|A|353
5NGM|1|AA|A|354
5NGM|1|AA|G|355

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AS

50S ribosomal protein L24