HL_5NGM_012

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUAAUAAUC

Length

9 nucleotides

Bulged bases

5NGM|1|AA|A|372, 5NGM|1|AA|A|373, 5NGM|1|AA|U|374

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_012 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1125

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

5NGM|1|AA|G|370
5NGM|1|AA|U|371
5NGM|1|AA|A|372
5NGM|1|AA|A|373
5NGM|1|AA|U|374
5NGM|1|AA|A|375
5NGM|1|AA|A|376
5NGM|1|AA|U|377
5NGM|1|AA|C|378

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AE

50S ribosomal protein L4

Chain AS

50S ribosomal protein L24