HL_5NGM_014

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

5NGM|1|AA|G|457

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_014 not in the Motif Atlas

Homologous match to HL_7RQB_014

Geometric discrepancy: 0.1014

The information below is about HL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_96598.1

Basepair signature

cWW

Number of instances in this motif group

15

Unit IDs

5NGM|1|AA|G|456
5NGM|1|AA|G|457
5NGM|1|AA|A|458
5NGM|1|AA|C|459
5NGM|1|AA|C|460
5NGM|1|AA|A|461
5NGM|1|AA|U|462
5NGM|1|AA|C|463

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains