HL_5NGM_016

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_016 not in the Motif Atlas

Homologous match to HL_7RQB_016

Geometric discrepancy: 0.0997

The information below is about HL_7RQB_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5NGM|1|AA|C|533
5NGM|1|AA|G|534
5NGM|1|AA|G|535
5NGM|1|AA|A|536
5NGM|1|AA|A|537
5NGM|1|AA|G|538

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AQ

50S ribosomal protein L22

Chain AS

50S ribosomal protein L24