HL_5NGM_017

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUUAAUG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|U|590, 5NGM|1|AA|U|593

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_017 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.1209

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

5NGM|1|AA|C|587
5NGM|1|AA|G|588
5NGM|1|AA|U|589
5NGM|1|AA|U|590
5NGM|1|AA|A|591
5NGM|1|AA|A|592
5NGM|1|AA|U|593
5NGM|1|AA|G|594

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AH

50S ribosomal protein L13

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21