HL_5NGM_022

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

5NGM|1|AA|A|761

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_022 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.1565

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

5NGM|1|AA|G|757
5NGM|1|AA|G|758
5NGM|1|AA|U|759
5NGM|1|AA|A|760
5NGM|1|AA|A|761
5NGM|1|AA|C|762
5NGM|1|AA|A|763
5NGM|1|AA|C|764

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain Aa

Small subunit ribosomal RNA; SSU rRNA

Chain Ao

30S ribosomal protein S15