HL_5NGM_026

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGGCCGGUUAC

Length

11 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_026 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3229

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

5NGM|1|AA|G|925
5NGM|1|AA|G|926
5NGM|1|AA|G|927
5NGM|1|AA|C|928
5NGM|1|AA|C|929
5NGM|1|AA|G|937
5NGM|1|AA|G|938
5NGM|1|AA|U|939
5NGM|1|AA|U|940
5NGM|1|AA|A|941
5NGM|1|AA|C|942

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains