3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
GAAACAGC
Length
8 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5NGM_028 not in the Motif Atlas
Homologous match to HL_5J7L_160
Geometric discrepancy: 0.0911
The information below is about HL_5J7L_160
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_42998.2
Basepair signature
cWW-F-F-F-F-F-F
Number of instances in this motif group
7

Unit IDs

5NGM|1|AA|G|1022
5NGM|1|AA|A|1023
5NGM|1|AA|A|1024
5NGM|1|AA|A|1025
5NGM|1|AA|C|1026
5NGM|1|AA|A|1027
5NGM|1|AA|G|1028
5NGM|1|AA|C|1029

Current chains

Chain AA
23S Ribosomal RNA

Nearby chains

Chain AO
50S ribosomal protein L20
Chain AP
50S ribosomal protein L21
Chain AX
50S ribosomal protein L30

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.2267 s