HL_5NGM_031

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_031 not in the Motif Atlas

Homologous match to HL_4WF9_031

Geometric discrepancy: 0.1158

The information below is about HL_4WF9_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5NGM|1|AA|C|1260
5NGM|1|AA|G|1261
5NGM|1|AA|U|1262
5NGM|1|AA|A|1263
5NGM|1|AA|A|1264
5NGM|1|AA|G|1265

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AJ

50S ribosomal protein L15

Chain AO

50S ribosomal protein L20

Chain AP

50S ribosomal protein L21