HL_5NGM_032

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUGAGAAUC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_032 not in the Motif Atlas

Homologous match to HL_4WF9_032

Geometric discrepancy: 0.1228

The information below is about HL_4WF9_032

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_28252.9

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

5NGM|1|AA|G|1318
5NGM|1|AA|U|1319
5NGM|1|AA|G|1320
5NGM|1|AA|A|1321
5NGM|1|AA|G|1322
5NGM|1|AA|A|1323
5NGM|1|AA|A|1324
5NGM|1|AA|U|1325
5NGM|1|AA|C|1326

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L17

Chain AQ

50S ribosomal protein L22

Chain AZ

50S ribosomal protein L32