HL_5NGM_036

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5NGM|1|AA|C|1536, 5NGM|1|AA|U|1540

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_036 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1095

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5NGM|1|AA|G|1535
5NGM|1|AA|C|1536
5NGM|1|AA|A|1537
5NGM|1|AA|A|1538
5NGM|1|AA|A|1539
5NGM|1|AA|U|1540
5NGM|1|AA|C|1541

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AC

50S ribosomal protein L2