HL_5NGM_038

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5NGM|1|AA|A|1658, 5NGM|1|AA|A|1660, 5NGM|1|AA|A|1662

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_038 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1186

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NGM|1|AA|C|1656
5NGM|1|AA|G|1657
5NGM|1|AA|A|1658
5NGM|1|AA|C|1659
5NGM|1|AA|A|1660
5NGM|1|AA|C|1661
5NGM|1|AA|A|1662
5NGM|1|AA|G|1663

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain A2

50S ribosomal protein L34

Chain AQ

50S ribosomal protein L22