HL_5NGM_048
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 5NGM|1|AA|A|2057, 5NGM|1|AA|A|2058, 5NGM|1|AA|G|2059
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_048 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1186
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NGM|1|AA|G|2054
5NGM|1|AA|U|2055
5NGM|1|AA|G|2056
5NGM|1|AA|A|2057
5NGM|1|AA|A|2058
5NGM|1|AA|G|2059
5NGM|1|AA|A|2060
5NGM|1|AA|U|2061
5NGM|1|AA|G|2062
5NGM|1|AA|C|2063
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain AD
- 50S ribosomal protein L3
- Chain AO
- 50S ribosomal protein L20
- Chain AP
- 50S ribosomal protein L21
- Chain AZ
- 50S ribosomal protein L32
Coloring options: