HL_5NGM_051

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

5NGM|1|AA|G|2277

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_051 not in the Motif Atlas

Homologous match to HL_5J7L_186

Geometric discrepancy: 0.0922

The information below is about HL_5J7L_186

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

5NGM|1|AA|C|2275
5NGM|1|AA|U|2276
5NGM|1|AA|G|2277
5NGM|1|AA|G|2278
5NGM|1|AA|G|2279
5NGM|1|AA|G|2280
5NGM|1|AA|C|2281
5NGM|1|AA|G|2282
5NGM|1|AA|G|2283

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27