HL_5NGM_053

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GGUUGAAAUC*C

Length

11 nucleotides

Bulged bases

5NGM|1|AA|U|2332

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_053 not in the Motif Atlas

Homologous match to HL_4WF9_051

Geometric discrepancy: 0.5291

The information below is about HL_4WF9_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NGM|1|AA|G|2330
5NGM|1|AA|G|2331
5NGM|1|AA|U|2332
5NGM|1|AA|U|2333
5NGM|1|AA|G|2334
5NGM|1|AA|A|2336
5NGM|1|AA|A|2337
5NGM|1|AA|A|2338
5NGM|1|AA|U|2339
5NGM|1|AA|C|2340
*
5NGM|1|AA|C|2340

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5