HL_5NGM_054

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_054 not in the Motif Atlas

Homologous match to HL_4WF9_052

Geometric discrepancy: 0.1346

The information below is about HL_4WF9_052

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_52651.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

27

Unit IDs

5NGM|1|AA|U|2351
5NGM|1|AA|G|2352
5NGM|1|AA|U|2353
5NGM|1|AA|A|2354
5NGM|1|AA|A|2355
5NGM|1|AA|A|2356
5NGM|1|AA|G|2357
5NGM|1|AA|G|2358

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AF

50S ribosomal protein L5

Chain AK

50S ribosomal protein L16

Chain AU

50S ribosomal protein L27