HL_5NGM_063

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGCCAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_063 not in the Motif Atlas

Homologous match to HL_5J7L_198

Geometric discrepancy: 0.0915

The information below is about HL_5J7L_198

Detailed Annotation

Ribsomal LSU H95

Broad Annotation

Ribsomal LSU H95

Motif group

HL_65794.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

14

Unit IDs

5NGM|1|AA|U|2728
5NGM|1|AA|G|2729
5NGM|1|AA|C|2730
5NGM|1|AA|C|2731
5NGM|1|AA|A|2732
5NGM|1|AA|A|2733

Current chains

Chain AA

23S Ribosomal RNA

Nearby chains

Chain AL

50S ribosomal protein L17