HL_5NGM_087

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GUUUCCGC

Length

8 nucleotides

Bulged bases

5NGM|1|Aa|C|852, 5NGM|1|Aa|C|853

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_087 not in the Motif Atlas

Homologous match to HL_5J7L_018

Geometric discrepancy: 0.462

The information below is about HL_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_37344.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|G|848
5NGM|1|Aa|U|849
5NGM|1|Aa|U|850
5NGM|1|Aa|U|851
5NGM|1|Aa|C|852
5NGM|1|Aa|C|853
5NGM|1|Aa|G|854
5NGM|1|Aa|C|855

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Ar

30S ribosomal protein S18