3D structure

PDB id
5NGM (explore in PDB, NAKB, or RNA 3D Hub)
Description
2.9S structure of the 70S ribosome composing the S. aureus 100S complex
Experimental method
ELECTRON MICROSCOPY
Resolution
2.9 Å

Loop

Sequence
CGCAAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_5NGM_089 not in the Motif Atlas
Homologous match to HL_6CZR_091
Geometric discrepancy: 0.1143
The information below is about HL_6CZR_091
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.6
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
360

Unit IDs

5NGM|1|Aa|C|906
5NGM|1|Aa|G|907
5NGM|1|Aa|C|908
5NGM|1|Aa|A|909
5NGM|1|Aa|A|910
5NGM|1|Aa|G|911

Current chains

Chain Aa
16S ribosomal RNA

Nearby chains

Chain AA
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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