HL_5NGM_091

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_091 not in the Motif Atlas

Geometric match to HL_5J7L_143

Geometric discrepancy: 0.2167

The information below is about HL_5J7L_143

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

5NGM|1|Aa|A|1021
5NGM|1|Aa|G|1022
5NGM|1|Aa|A|1023
5NGM|1|Aa|G|1024
5NGM|1|Aa|A|1025
5NGM|1|Aa|U|1026

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain An

30S ribosomal protein S14 type Z

Chain As

30S ribosomal protein S19