HL_5NGM_098

3D structure

PDB id

5NGM (explore in PDB, NAKB, or RNA 3D Hub)

Description

2.9S structure of the 70S ribosome composing the S. aureus 100S complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NGM_098 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.134

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

5NGM|1|Aa|C|1324
5NGM|1|Aa|U|1325
5NGM|1|Aa|G|1326
5NGM|1|Aa|C|1327
5NGM|1|Aa|A|1328
5NGM|1|Aa|A|1329
5NGM|1|Aa|C|1330
5NGM|1|Aa|U|1331
5NGM|1|Aa|C|1332
5NGM|1|Aa|G|1333

Current chains

Chain Aa

16S ribosomal RNA

Nearby chains

Chain Am

30S ribosomal protein S13

Chain An

30S ribosomal protein S14 type Z

Chain As

30S ribosomal protein S19