HL_5NGM_102
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUACUAACGA
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_102 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.2157
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
5NGM|1|AA|U|59
5NGM|1|AA|U|60
5NGM|1|AA|A|61
5NGM|1|AA|C|62
5NGM|1|AA|U|63
5NGM|1|AA|A|64
5NGM|1|AA|A|65
5NGM|1|AA|C|66
5NGM|1|AA|G|67
5NGM|1|AA|A|68
Current chains
- Chain AA
- 23S Ribosomal RNA
Nearby chains
- Chain A2
- 50S ribosomal protein L34
- Chain AR
- 50S ribosomal protein L23
- Chain AW
- 50S ribosomal protein L29
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