HL_5NGM_109
3D structure
- PDB id
- 5NGM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- 2.9S structure of the 70S ribosome composing the S. aureus 100S complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- CGAAGCAACGCG
- Length
- 12 nucleotides
- Bulged bases
- 5NGM|1|Aa|G|980
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NGM_109 not in the Motif Atlas
- Geometric match to HL_1KH6_003
- Geometric discrepancy: 0.2147
- The information below is about HL_1KH6_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_27483.1
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 2
Unit IDs
5NGM|1|Aa|C|971
5NGM|1|Aa|G|972
5NGM|1|Aa|A|973
5NGM|1|Aa|A|974
5NGM|1|Aa|G|975
5NGM|1|Aa|C|976
5NGM|1|Aa|A|977
5NGM|1|Aa|A|978
5NGM|1|Aa|C|979
5NGM|1|Aa|G|980
5NGM|1|Aa|C|981
5NGM|1|Aa|G|982
Current chains
- Chain Aa
- 16S ribosomal RNA
Nearby chains
- Chain Ai
- 30S ribosomal protein S9
- Chain Aj
- 30S ribosomal protein S10
- Chain An
- 30S ribosomal protein S14 type Z
- Chain Av
- Ribosome hibernation promoting factor
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