HL_5NJT_031

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_031 not in the Motif Atlas

Homologous match to HL_4LFB_032

Geometric discrepancy: 0.1204

The information below is about HL_4LFB_032

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5NJT|1|A|C|1525
5NJT|1|A|G|1526
5NJT|1|A|G|1527
5NJT|1|A|A|1528
5NJT|1|A|A|1529
5NJT|1|A|G|1530

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain U

Large subunit ribosomal RNA; LSU rRNA