5NJT Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_5NJT_001 | 1/A/14:24 | No text annotation | homologous HL_4LFB_001 HL_31940.1 | |
| HL_5NJT_003 | 1/A/157:162 | GNRA | homologous HL_4LFB_003 HL_34789.1 | |
| HL_5NJT_004 | 1/A/192:197 | Externally structured | geometric HL_8C3A_022 NA | |
| HL_5NJT_005 | 1/A/217:222 | UNCG | homologous HL_5J7L_005 NA | |
| HL_5NJT_006 | 1/A/267:275 | GNRA related | homologous HL_4LFB_006 HL_36455.1 | |
| HL_5NJT_007 | 1/A/304:309 | GNRA | homologous HL_5J7L_007 NA | |
| HL_5NJT_008 | 1/A/328:341 | No text annotation | homologous HL_5J7L_008 NA | |
| HL_5NJT_009 | 1/A/350:355 | UNCG | homologous HL_4LFB_009 HL_61337.1 | |
| HL_5NJT_010 | 1/A/387:392 | GNRA | homologous HL_5J7L_010 NA | |
| HL_5NJT_011 | 1/A/427:432 | UNCG | homologous HL_4LFB_011 HL_61337.1 | |
| HL_5NJT_012 | 1/A/472:478 | GNRA | geometric HL_3DIL_003 HL_48677.1 | |
| HL_5NJT_013 | 1/A/531:536 | No text annotation | geometric HL_4WF9_003 HL_75660.6 | |
| HL_5NJT_014 | 1/A/626:632 | GNRA-like with tWH | homologous HL_4LFB_014 HL_92337.1 | |
| HL_5NJT_015 | 1/A/698:707 | No text annotation | homologous HL_4LFB_015 HL_38491.1 | |
| HL_5NJT_016 | 1/A/735:740 | GNRA | homologous HL_4LFB_016 HL_34789.1 | |
| HL_5NJT_017 | 1/A/795:805 | No text annotation | homologous HL_5J7L_017 NA | |
| HL_5NJT_018 | 1/A/849:856 | tRNA anticodon loop | geometric HL_2D6F_005 HL_91620.1 | |
| HL_5NJT_019 | 1/A/872:877 | GNRA | homologous HL_4LFB_019 HL_34789.1 | |
| HL_5NJT_020 | 1/A/907:912 | GNRA | homologous HL_4LFB_020 HL_34789.1 | |
| HL_5NJT_021 | 1/A/973:982 | No text annotation | homologous HL_4LFB_021 HL_97521.1 | |
| HL_5NJT_022 | 1/A/1022:1027 | GNRA | homologous HL_4LFB_022 HL_34789.1 | |
| HL_5NJT_023 | 1/A/1086:1091 | GNRA | homologous HL_5J7L_023 NA | |
| HL_5NJT_024 | 1/A/1099:1106 | T-loop related | homologous HL_4LFB_025 HL_63894.1 | |
| HL_5NJT_026 | 1/A/1174:1180 | GNRA | homologous HL_5J7L_026 NA | |
| HL_5NJT_027 | 1/A/1274:1279 | GNRA | homologous HL_5J7L_027 NA | |
| HL_5NJT_028 | 1/A/1323:1332 | T-loop with 3 stacked bulged bases | homologous HL_5J7L_028 NA | |
| HL_5NJT_029 | 1/A/1365:1375 | No text annotation | homologous HL_5J7L_029 NA | |
| HL_5NJT_030 | 1/A/1459:1463 | No text annotation | geometric HL_4V9F_003 HL_75660.6 | |
| HL_5NJT_031 | 1/A/1525:1530 | GNRA | homologous HL_4LFB_032 HL_34789.1 | |
| HL_5NJT_032 | 1/U/67:74 | No text annotation | homologous HL_4WF9_001 HL_08550.1 | |
| HL_5NJT_034 | 1/U/122:127 | No text annotation | homologous HL_4WF9_003 HL_75660.6 | |
| HL_5NJT_035 | 1/U/136:143 | GNRA wlth tandem sheared | homologous HL_4WF9_004 HL_98423.1 | |
| HL_5NJT_036 | 1/U/159:169 | No text annotation | homologous HL_5J7L_138 NA | |
| HL_5NJT_037 | 1/U/197:204 | No text annotation | homologous HL_7A0S_006 HL_48677.1 | |
| HL_5NJT_039 | 1/U/249:255 | No text annotation | homologous HL_4WF9_008 HL_76371.1 | |
| HL_5NJT_041 | 1/U/349:356 | T-loop with 2 stacked bulged bases | homologous HL_5J7L_142 NA | |
| HL_5NJT_042 | 1/U/363:367 | No text annotation | homologous HL_5J7L_143 NA | |
| HL_5NJT_043 | 1/U/371:379 | T-loop with unstacked turn | homologous HL_7RQB_012 NA | |
| HL_5NJT_044 | 1/U/429:439 | No text annotation | homologous HL_5J7L_145 NA | |
| HL_5NJT_045 | 1/U/457:464 | Pseudoknot geometry | homologous HL_7A0S_014 HL_30680.4 | |
| HL_5NJT_046 | 1/U/509:514 | GNRA | homologous HL_4WF9_015 HL_34789.1 | |
| HL_5NJT_047 | 1/U/534:539 | GNRA | homologous HL_7RQB_016 NA | |
| HL_5NJT_048 | 1/U/588:595 | No text annotation | homologous HL_4WF9_017 HL_50318.1 | |
| HL_5NJT_049 | 1/U/610:619 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_018 HL_33597.1 | |
| HL_5NJT_050 | 1/U/656:662 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_5NJT_051 | 1/U/675:680 | GNRA | homologous HL_4WF9_020 HL_34789.1 | |
| HL_5NJT_052 | 1/U/687:693 | No text annotation | homologous HL_7RQB_021 NA | |
| HL_5NJT_053 | 1/U/759:766 | GNRA wlth tandem sheared | homologous HL_5J7L_154 NA | |
| HL_5NJT_054 | 1/U/791:800 | No text annotation | homologous HL_7A0S_022 HL_50204.1 | |
| HL_5NJT_055 | 1/U/826:832 | UNCG variation | geometric HL_1P6V_001 NA | |
| HL_5NJT_056 | 1/U/873:878 | No text annotation | homologous HL_5J7L_157 NA | |
| HL_5NJT_058 | 1/U/1001:1008 | GNRA | homologous HL_4WF9_027 HL_34789.1 | |
| HL_5NJT_059 | 1/U/1024:1031 | No text annotation | homologous HL_5J7L_160 NA | |
| HL_5NJT_063 | 1/U/1262:1267 | GNRA | homologous HL_7A0S_031 HL_34789.1 | |
| HL_5NJT_064 | 1/U/1320:1328 | T-loop with 2 stacked bulged bases | homologous HL_4WF9_032 HL_33597.1 | |
| HL_5NJT_065 | 1/U/1363:1369 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_166 NA | |
| HL_5NJT_066 | 1/U/1402:1407 | GNRA | homologous HL_7RQB_035 NA | |
| HL_5NJT_067 | 1/U/1428:1437 | No text annotation | homologous HL_4WF9_035 HL_77449.1 | |
| HL_5NJT_104 | 1/U/1494:1509 | No text annotation | ||
| HL_5NJT_068 | 1/U/1496:1507 | UNCG variation | geometric HL_5J7L_200 NA | |
| HL_5NJT_069 | 1/U/1538:1544 | Pseudoknot geometry with 3' bulge | homologous HL_5J7L_170 NA | |
| HL_5NJT_070 | 1/U/1577:1589 | No text annotation | ||
| HL_5NJT_071 | 1/U/1613:1616 | Mini UNCG | homologous HL_7A0S_039 HL_90436.1 | |
| HL_5NJT_072 | 1/U/1657:1664 | No text annotation | homologous HL_7RQB_040 NA | |
| HL_5NJT_073 | 1/U/1675:1681 | GNRA | homologous HL_5J7L_174 NA | |
| HL_5NJT_074 | 1/U/1736:1741 | No text annotation | geometric HL_7RQB_042 NA | |
| HL_5NJT_076 | 1/U/1781:1785 | No text annotation | homologous HL_7A0S_044 HL_80709.4 | |
| HL_5NJT_077 | 1/U/1806:1816 | No text annotation | homologous HL_5J7L_178 NA | |
| HL_5NJT_078 | 1/U/1835:1840 | GNRA related | homologous HL_5J7L_179 NA | |
| HL_5NJT_079 | 1/U/1897:1902 | No text annotation | geometric HL_361D_002 NA | |
| HL_5NJT_080 | 1/U/1939:1949 | No text annotation | geometric HL_5TBW_049 NA | |
| HL_5NJT_081 | 1/U/1978:1986 | No text annotation | homologous HL_4WF9_046 HL_61418.1 | |
| HL_5NJT_082 | 1/U/2056:2065 | No text annotation | homologous HL_4WF9_047 HL_78372.1 | |
| HL_5NJT_084 | 1/U/2238:2244 | No text annotation | homologous HL_5J7L_185 NA | |
| HL_5NJT_085 | 1/U/2277:2285 | No text annotation | homologous HL_4WF9_049 HL_11974.1 | |
| HL_5NJT_086 | 1/U/2293:2305 | No text annotation | homologous HL_7RQB_054 NA | |
| HL_5NJT_105 | 1/U/2333:2341 | No text annotation | homologous HL_5J7L_219 NA | |
| HL_5NJT_088 | 1/U/2353:2360 | Pseudoknot geometry | homologous HL_5J7L_189 NA | |
| HL_5NJT_089 | 1/U/2384:2391 | GNRA with extra cWW | homologous HL_4WF9_053 HL_45359.1 | |
| HL_5NJT_090 | 1/U/2403:2408 | GNRA | homologous HL_7RQB_058 NA | |
| HL_5NJT_091 | 1/U/2433:2442 | No text annotation | homologous HL_4WF9_055 HL_51853.1 | |
| HL_5NJT_092 | 1/U/2500:2508 | No text annotation | homologous HL_7A0S_059 HL_52011.1 | |
| HL_5NJT_093 | 1/U/2557:2564 | GNRA variation | homologous HL_7A0S_060 HL_46665.1 | |
| HL_5NJT_094 | 1/U/2580:2586 | No text annotation | homologous HL_4WF9_058 HL_48677.1 | |
| HL_5NJT_095 | 1/U/2623:2628 | GNRA | homologous HL_4WF9_059 HL_34789.1 | |
| HL_5NJT_096 | 1/U/2687:2692 | GNRA related | geometric HL_5J7L_179 NA | |
| HL_5NJT_097 | 1/U/2730:2735 | Ribsomal LSU H95 | homologous HL_7A0S_064 HL_12125.1 | |
| HL_5NJT_098 | 1/U/2774:2788 | No text annotation | homologous HL_5J7L_199 NA | |
| HL_5NJT_100 | 1/U/2844:2852 | No text annotation | homologous HL_5J7L_201 NA | |
| HL_5NJT_101 | 1/U/2881:2886 | GNRA | homologous HL_7RQB_069 NA | |
| HL_5NJT_102 | 1/V/36:42 | No text annotation | homologous HL_5J7L_203 NA | |
| HL_5NJT_103 | 1/V/84:88 | Mini UNCG | homologous HL_5J7L_204 NA |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| HL_5NJT_002 | No text annotation | ||
| HL_5NJT_025 | No text annotation | ||
| HL_5NJT_033 | Pseudoknot geometry | ||
| HL_5NJT_038 | No text annotation | ||
| HL_5NJT_040 | No text annotation | ||
| HL_5NJT_057 | No text annotation | ||
| HL_5NJT_060 | No text annotation | ||
| HL_5NJT_061 | No text annotation | ||
| HL_5NJT_062 | No text annotation | ||
| HL_5NJT_075 | No text annotation | ||
| HL_5NJT_083 | No text annotation | ||
| HL_5NJT_087 | No text annotation | ||
| HL_5NJT_099 | UNCG variation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_5NJT_001 | 1/A/32:34, 1/A/561:562 | Single bulged G | homologous IL_6CZR_113 NA | |
| IL_5NJT_002 | 1/A/46:47, 1/A/404:406 | Single bulged A | homologous IL_5J7L_002 NA | |
| IL_5NJT_003 | 1/A/49:54, 1/A/367:369 | Decoding loop related | geometric IL_2O3X_003 IL_61702.1 | |
| IL_5NJT_004 | 1/A/56:58, 1/A/364:365 | Minor groove platform | homologous IL_4LFB_004 IL_34520.1 | |
| IL_5NJT_005 | 1/A/65:68, 1/A/101:102 | Multiple bulged bases | homologous IL_4LFB_005 IL_71421.1 | |
| IL_5NJT_008 | 1/A/127:130, 1/A/239:240 | Multiple bulged bases | homologous IL_4LFB_007 IL_75289.1 | |
| IL_5NJT_009 | 1/A/131:135, 1/A/235:238 | No text annotation | homologous IL_4LFB_008 IL_60988.1 | |
| IL_5NJT_010 | 1/A/146:152, 1/A/167:174 | tWH-tWH-tHW-tHW | homologous IL_5J7L_012 NA | |
| IL_5NJT_011 | 1/A/250:255, 1/A/285:292 | Kink-turn with non-sequential stacking | homologous IL_5J7L_014 NA | |
| IL_5NJT_013 | 1/A/300:301, 1/A/312:316 | C-loop | homologous IL_4LFB_013 IL_06671.1 | |
| IL_5NJT_014 | 1/A/375:377, 1/A/400:401 | Single bulged U | geometric IL_5J7L_017 NA | |
| IL_5NJT_015 | 1/A/379:383, 1/A/397:398 | C-loop | geometric IL_4LFB_015 IL_26900.1 | |
| IL_5NJT_016 | 1/A/383:384, 1/A/395:397 | Single bulged G | homologous IL_5J7L_019 NA | |
| IL_5NJT_017 | 1/A/417:424, 1/A/435:441 | No text annotation | homologous IL_5J7L_020 NA | |
| IL_5NJT_018 | 1/A/448:449, 1/A/502:506 | Minor groove platform | geometric IL_4KQY_004 IL_94991.1 | |
| IL_5NJT_185 | 1/A/454:463, 1/A/488:497 | No text annotation | ||
| IL_5NJT_019 | 1/A/463:464, 1/A/486:488 | Single stack bend | geometric IL_7A0S_054 IL_15011.1 | |
| IL_5NJT_020 | 1/A/513:520, 1/A/549:550 | SSU/LSU pseudoknot | homologous IL_4LFB_020 IL_11411.1 | |
| IL_5NJT_021 | 1/A/524:530, 1/A/537:545 | Kink-turn related | geometric IL_4V88_415 NA | |
| IL_5NJT_022 | 1/A/578:584, 1/A/890:891 | No text annotation | homologous IL_5J7L_026 NA | |
| IL_5NJT_023 | 1/A/589:593, 1/A/766:770 | tSH-tHW-tHS | homologous IL_5J7L_027 NA | |
| IL_5NJT_024 | 1/A/603:605, 1/A/653:654 | Major groove platform | homologous IL_5J7L_028 NA | |
| IL_5NJT_025 | 1/A/606:607, 1/A/649:652 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_029 NA | |
| IL_5NJT_027 | 1/A/614:621, 1/A/637:641 | No text annotation | homologous IL_5J7L_030 NA | |
| IL_5NJT_028 | 1/A/663:664, 1/A/760:763 | Major groove platform; stack outside cWW | geometric IL_1KUQ_001 IL_74641.1 | |
| IL_5NJT_029 | 1/A/666:668, 1/A/755:758 | No text annotation | geometric IL_4V9F_072 IL_75527.1 | |
| IL_5NJT_030 | 1/A/671:675, 1/A/749:752 | Tandem non-canonical cWW pairs | homologous IL_5J7L_033 NA | |
| IL_5NJT_186 | 1/A/682:686, 1/A/722:726 | Triple non-canonical cWW pairs | homologous IL_4LFB_065 IL_71154.1 | |
| IL_5NJT_032 | 1/A/693:697, 1/A/708:715 | Kink-turn | homologous IL_5J7L_035 NA | |
| IL_5NJT_033 | 1/A/783:787, 1/A/813:814 | Left turn | homologous IL_5J7L_036 NA | |
| IL_5NJT_034 | 1/A/788:792, 1/A/808:812 | tSH-tHW-tHS | homologous IL_6CZR_145 NA | |
| IL_5NJT_035 | 1/A/897:904, 1/A/915:920 | 8x6 Sarcin-Ricin with inserted Y; G-bulge | homologous IL_4LFB_034 IL_84044.1 | |
| IL_5NJT_036 | 1/A/932:933, 1/A/1402:1404 | Single bulged A | homologous IL_5J7L_039 NA | |
| IL_5NJT_037 | 1/A/935:937, 1/A/1399:1400 | Single bulged G | homologous IL_5J7L_040 NA | |
| IL_5NJT_038 | 1/A/943:945, 1/A/1389:1393 | Minor groove platform | homologous IL_5J7L_041 NA | |
| IL_5NJT_039 | 1/A/963:964, 1/A/1235:1237 | No text annotation | homologous IL_6CZR_150 NA | |
| IL_5NJT_040 | 1/A/1003:1007, 1/A/1054:1055 | Minor groove platform | homologous IL_5J7L_043 NA | |
| IL_5NJT_043 | 1/A/1058:1060, 1/A/1217:1218 | Single bulged U | homologous IL_5J7L_046 NA | |
| IL_5NJT_044 | 1/A/1062:1066, 1/A/1213:1215 | Isolated cWS basepair | homologous IL_4LFB_044 IL_82453.1 | |
| IL_5NJT_045 | 1/A/1067:1068, 1/A/1208:1212 | Minor groove platform | homologous IL_5J7L_048 NA | |
| IL_5NJT_046 | 1/A/1070:1071, 1/A/1204:1206 | Single bulged U | homologous IL_4LFB_046 IL_97561.1 | |
| IL_5NJT_047 | 1/A/1071:1073, 1/A/1202:1204 | Isolated non-canonical cWW pair | geometric IL_5J7L_050 NA | |
| IL_5NJT_051 | 1/A/1256:1262, 1/A/1293:1299 | No text annotation | homologous IL_4LFB_051 IL_12056.1 | |
| IL_5NJT_052 | 1/A/1264:1267, 1/A/1286:1291 | 180 degree turn | homologous IL_6CZR_161 NA | |
| IL_5NJT_054 | 1/A/1312:1317, 1/A/1338:1343 | No text annotation | geometric IL_5J7L_057 NA | |
| IL_5NJT_055 | 1/A/1408:1410, 1/A/1511:1514 | No text annotation | geometric IL_4V88_463 NA | |
| IL_5NJT_056 | 1/A/1410:1413, 1/A/1507:1511 | No text annotation | geometric IL_4V88_464 NA | |
| IL_5NJT_057 | 1/A/1414:1416, 1/A/1504:1506 | Isolated non-canonical cWW pair | geometric IL_4E59_001 IL_01003.1 | |
| IL_5NJT_058 | 1/A/1416:1418, 1/A/1501:1504 | Isolated cWH basepair | geometric IL_1M5K_004 NA | |
| IL_5NJT_059 | 1/A/1421:1423, 1/A/1496:1498 | Isolated non-canonical cWW pair | homologous IL_5J7L_061 NA | |
| IL_5NJT_060 | 1/A/1425:1428, 1/A/1491:1494 | Double sheared | homologous IL_5J7L_062 NA | |
| IL_5NJT_061 | 1/A/1433:1436, 1/A/1483:1486 | Tandem non-canonical cWW pairs | geometric IL_5TBW_100 NA | |
| IL_5NJT_062 | 1/A/1439:1444, 1/A/1476:1480 | Triple sheared related | homologous IL_5J7L_063 NA | |
| IL_5NJT_063 | 1/A/1444:1446, 1/A/1474:1476 | Isolated non-canonical cWW pair | geometric IL_4LFB_010 IL_01003.1 | |
| IL_5NJT_064 | 1/A/1449:1452, 1/A/1469:1471 | Isolated tHS basepair with bulges | geometric IL_7A0S_077 IL_87316.1 | |
| IL_5NJT_065 | 1/A/1454:1457, 1/A/1465:1467 | No text annotation | homologous IL_5J7L_065 NA | |
| IL_5NJT_066 | 1/U/24:30, 1/U/556:562 | Triple sheared with non-canonical cWW | geometric IL_7A0S_001 IL_22311.1 | |
| IL_5NJT_067 | 1/U/36:37, 1/U/489:491 | Single bulged A | homologous IL_5J7L_246 NA | |
| IL_5NJT_068 | 1/U/43:44, 1/U/481:483 | Minor groove platform | homologous IL_5J7L_247 NA | |
| IL_5NJT_189 | 1/U/56:76, 1/U/109:113 | No text annotation | geometric IL_5TBW_144 NA | |
| IL_5NJT_069 | 1/U/81:85, 1/U/97:104 | Kink-turn | homologous IL_7RQB_004 NA | |
| IL_5NJT_070 | 1/U/152:153, 1/U/175:177 | Single bulged A | homologous IL_4WF9_006 IL_14190.1 | |
| IL_5NJT_190 | 1/U/186:187, 1/U/215:218 | No text annotation | ||
| IL_5NJT_071 | 1/U/191:197, 1/U/204:211 | 8x7 Sarcin-Ricin; G-bulge | geometric IL_7A0S_006 IL_62167.1 | |
| IL_5NJT_072 | 1/U/241:248, 1/U/256:262 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_009 IL_62167.1 | |
| IL_5NJT_073 | 1/U/305:306, 1/U/410:413 | Major groove minor groove platform; mini C-loop | geometric IL_4V9F_068 IL_73108.1 | |
| IL_5NJT_074 | 1/U/310:316, 1/U/404:406 | No text annotation | ||
| IL_5NJT_075 | 1/U/319:327, 1/U/400:401 | No text annotation | ||
| IL_5NJT_076 | 1/U/336:338, 1/U/387:391 | No text annotation | homologous IL_5J7L_254 NA | |
| IL_5NJT_077 | 1/U/344:346, 1/U/359:360 | No text annotation | ||
| IL_5NJT_078 | 1/U/528:531, 1/U/542:555 | No text annotation | homologous IL_5J7L_255 NA | |
| IL_5NJT_079 | 1/U/582:585, 1/U/598:601 | Double sheared | homologous IL_4WF9_016 IL_58355.1 | |
| IL_5NJT_080 | 1/U/608:610, 1/U/619:621 | Isolated non-canonical cWW pair | geometric IL_3SZX_002 IL_01003.1 | |
| IL_5NJT_081 | 1/U/639:641, 1/U/707:709 | Isolated non-canonical cWW pair | homologous IL_4WF9_018 IL_71625.1 | |
| IL_5NJT_082 | 1/U/650:654, 1/U/664:668 | AAA cross-strand stack | homologous IL_5J7L_258 NA | |
| IL_5NJT_083 | 1/U/719:721, 1/U/853:855 | Isolated non-canonical cWW pair | homologous IL_7A0S_014 IL_01003.1 | |
| IL_5NJT_084 | 1/U/721:725, 1/U/846:853 | tHW-tHW cross-strand stack | geometric IL_7RQB_018 NA | |
| IL_5NJT_085 | 1/U/744:745, 1/U/810:812 | Single bulged A | homologous IL_5J7L_261 NA | |
| IL_5NJT_086 | 1/U/749:754, 1/U/771:777 | No text annotation | geometric IL_4V88_462 NA | |
| IL_5NJT_087 | 1/U/785:787, 1/U/804:805 | Major groove platform | homologous IL_4WF9_026 IL_48076.7 | |
| IL_5NJT_088 | 1/U/822:824, 1/U/834:838 | Multiple bulged bases | homologous IL_7RQB_023 NA | |
| IL_5NJT_089 | 1/U/884:885, 1/U/986:988 | Single stack bend | homologous IL_7A0S_022 IL_15011.1 | |
| IL_5NJT_090 | 1/U/891:895, 1/U/977:980 | No text annotation | homologous IL_4WF9_029 IL_01742.1 | |
| IL_5NJT_091 | 1/U/899:900, 1/U/971:973 | Single stack bend | geometric IL_5J7L_032 NA | |
| IL_5NJT_092 | 1/U/903:909, 1/U/962:968 | 7x7 Sarcin-Ricin with intercalated A; G-bulge | geometric IL_4WF9_031 IL_94128.1 | |
| IL_5NJT_093 | 1/U/909:910, 1/U/960:962 | Minor groove platform | homologous IL_7RQB_028 NA | |
| IL_5NJT_094 | 1/U/911:915, 1/U/956:959 | C-loop | homologous IL_7RQB_029 NA | |
| IL_5NJT_098 | 1/U/998:1000, 1/U/1009:1011 | Isolated non-canonical cWW pair | homologous IL_7A0S_031 IL_01003.1 | |
| IL_5NJT_099 | 1/U/1040:1042, 1/U/1205:1206 | Single bulged C | homologous IL_4WF9_035 IL_05642.1 | |
| IL_5NJT_100 | 1/U/1044:1048, 1/U/1199:1203 | UAA/GAN | homologous IL_7A0S_033 IL_08938.1 | |
| IL_5NJT_101 | 1/U/1050:1057, 1/U/1196:1197 | SSU/LSU pseudoknot | homologous IL_7A0S_034 IL_11411.1 | |
| IL_5NJT_102 | 1/U/1057:1059, 1/U/1195:1196 | Single bulged U | geometric IL_5J7L_279 NA | |
| IL_5NJT_103 | 1/U/1064:1070, 1/U/1186:1190 | Kink-turn related | homologous IL_4WF9_039 IL_57188.6 | |
| IL_5NJT_104 | 1/U/1070:1076, 1/U/1170:1186 | No text annotation | geometric IL_4WF9_040 IL_50715.4 | |
| IL_5NJT_105 | 1/U/1077:1080, 1/U/1167:1169 | Isolated non-canonical cWW pair | homologous IL_7RQB_041 NA | |
| IL_5NJT_106 | 1/U/1089:1097, 1/U/1154:1158 | Kink-turn | homologous IL_5J7L_284 NA | |
| IL_5NJT_109 | 1/U/1237:1239, 1/U/1287:1290 | Isolated cWS basepair | homologous IL_4WF9_044 IL_42997.4 | |
| IL_5NJT_110 | 1/U/1243:1247, 1/U/1279:1283 | No text annotation | geometric IL_5TBW_121 NA | |
| IL_5NJT_111 | 1/U/1248:1255, 1/U/1274:1278 | Kink-turn | homologous IL_7A0S_043 IL_90775.1 | |
| IL_5NJT_112 | 1/U/1259:1261, 1/U/1268:1270 | Intercalated cWW | homologous IL_4WF9_047 IL_61702.1 | |
| IL_5NJT_113 | 1/U/1302:1309, 1/U/2040:2046 | 8x7 Sarcin-Ricin; G-bulge | homologous IL_4WF9_048 IL_62167.1 | |
| IL_5NJT_114 | 1/U/1349:1352, 1/U/1648:1649 | Major groove platform; stack outside cWW | homologous IL_7A0S_046 IL_74641.1 | |
| IL_5NJT_115 | 1/U/1358:1362, 1/U/1370:1372 | C-loop | homologous IL_7A0S_047 IL_06671.1 | |
| IL_5NJT_116 | 1/U/1390:1394, 1/U/1415:1419 | UAA/GAN | homologous IL_7A0S_048 IL_89021.3 | |
| IL_5NJT_117 | 1/U/1396:1400, 1/U/1409:1413 | tSH-tHW-tHS | homologous IL_5J7L_293 NA | |
| IL_5NJT_119 | 1/U/1455:1462, 1/U/1629:1632 | No text annotation | ||
| IL_5NJT_120 | 1/U/1463:1467, 1/U/1625:1628 | Other IL | homologous IL_4WF9_054 IL_74317.1 | |
| IL_5NJT_121 | 1/U/1478:1481, 1/U/1605:1609 | No text annotation | ||
| IL_5NJT_122 | 1/U/1483:1486, 1/U/1599:1603 | tSH-tHW | homologous IL_7RQB_057 NA | |
| IL_5NJT_123 | 1/U/1488:1490, 1/U/1595:1597 | Isolated non-canonical cWW pair | geometric IL_5MWI_006 NA | |
| IL_5NJT_124 | 1/U/1494:1496, 1/U/1507:1509 | Isolated non-canonical cWW pair | geometric IL_4V88_385 NA | |
| IL_5NJT_125 | 1/U/1514:1519, 1/U/1566:1571 | No text annotation | ||
| IL_5NJT_191 | 1/U/1514:1521, 1/U/1564:1571 | No text annotation | ||
| IL_5NJT_126 | 1/U/1521:1524, 1/U/1560:1564 | No text annotation | ||
| IL_5NJT_127 | 1/U/1527:1529, 1/U/1552:1557 | No text annotation | ||
| IL_5NJT_128 | 1/U/1535:1537, 1/U/1545:1546 | Single bulged A | homologous IL_5J7L_302 NA | |
| IL_5NJT_130 | 1/U/1696:1701, 1/U/2033:2035 | No text annotation | homologous IL_7A0S_059 IL_12566.5 | |
| IL_5NJT_131 | 1/U/1708:1710, 1/U/2024:2026 | Isolated tWW turn | homologous IL_4WF9_063 IL_10432.1 | |
| IL_5NJT_132 | 1/U/1711:1714, 1/U/2022:2023 | Major groove platform; stack outside cWW | homologous IL_4WF9_064 IL_74641.1 | |
| IL_5NJT_194 | 1/U/1711:1719, 1/U/2019:2023 | No text annotation | homologous IL_4WF9_117 IL_80252.1 | |
| IL_5NJT_133 | 1/U/1714:1719, 1/U/2019:2022 | Intercalated tWH | geometric IL_5TBW_077 NA | |
| IL_5NJT_134 | 1/U/1731:1736, 1/U/1741:1747 | tSH-tSH-tHH-tHS | homologous IL_7RQB_068 NA | |
| IL_5NJT_135 | 1/U/1756:1761, 1/U/1772:1776 | tSH-tHW-tWW | geometric IL_5J7L_022 NA | |
| IL_5NJT_136 | 1/U/1798:1800, 1/U/2009:2012 | Isolated non-canonical cWW pair | geometric IL_3RW6_004 IL_01003.1 | |
| IL_5NJT_137 | 1/U/1827:1833, 1/U/1842:1850 | Kink-turn related | homologous IL_7RQB_070 NA | |
| IL_5NJT_138 | 1/U/1866:1869, 1/U/1931:1932 | Minor groove platform, major groove intercalation | homologous IL_5J7L_314 NA | |
| IL_5NJT_139 | 1/U/1870:1871, 1/U/1927:1930 | Major groove intercalation | homologous IL_5J7L_315 NA | |
| IL_5NJT_140 | 1/U/1875:1878, 1/U/1922:1923 | Major groove minor groove platform; mini C-loop | homologous IL_5J7L_316 NA | |
| IL_5NJT_141 | 1/U/1880:1884, 1/U/1916:1920 | UAA/GAN with extra stack | homologous IL_7RQB_074 NA | |
| IL_5NJT_142 | 1/U/1885:1889, 1/U/1911:1915 | Triple sheared | homologous IL_7RQB_075 NA | |
| IL_5NJT_143 | 1/U/1893:1896, 1/U/1903:1907 | UAA/GAN related | homologous IL_5J7L_317 NA | |
| IL_5NJT_144 | 1/U/1962:1963, 1/U/1993:1996 | Bulged stacked bases | geometric IL_5J7L_318 NA | |
| IL_5NJT_145 | 1/U/1963:1974, 1/U/1990:1993 | No text annotation | homologous IL_7A0S_072 IL_04332.3 | |
| IL_5NJT_146 | 1/U/2079:2081, 1/U/2646:2647 | Major groove platform | homologous IL_7RQB_078 NA | |
| IL_5NJT_147 | 1/U/2083:2085, 1/U/2641:2644 | No text annotation | homologous IL_4WF9_079 IL_80025.1 | |
| IL_5NJT_148 | 1/U/2096:2098, 1/U/2471:2472 | Single bulged U | homologous IL_7RQB_080 NA | |
| IL_5NJT_149 | 1/U/2099:2100, 1/U/2467:2470 | Minor groove platform | homologous IL_4WF9_081 IL_34520.1 | |
| IL_5NJT_150 | 1/U/2110:2112, 1/U/2265:2268 | Isolated tHS basepair with bulges | homologous IL_7RQB_082 NA | |
| IL_5NJT_151 | 1/U/2124:2126, 1/U/2221:2223 | Isolated non-canonical cWW pair | geometric IL_3GM7_004 IL_01003.1 | |
| IL_5NJT_156 | 1/U/2231:2233, 1/U/2249:2250 | Single bulged G | homologous IL_4WF9_125 IL_28408.1 | |
| IL_5NJT_157 | 1/U/2326:2328, 1/U/2346:2350 | Isolated tHS basepair with bulges | geometric IL_4WF9_086 IL_14250.1 | |
| IL_5NJT_158 | 1/U/2379:2382, 1/U/2393:2396 | Double sheared | homologous IL_4WF9_087 IL_58355.1 | |
| IL_5NJT_159 | 1/U/2430:2432, 1/U/2443:2444 | Single bulged U | geometric IL_6UFG_004 NA | |
| IL_5NJT_160 | 1/U/2482:2483, 1/U/2527:2529 | Single stack bend | geometric IL_7RQB_091 NA | |
| IL_5NJT_161 | 1/U/2483:2484, 1/U/2525:2527 | Major groove platform | homologous IL_4WF9_090 IL_48076.7 | |
| IL_5NJT_162 | 1/U/2486:2488, 1/U/2522:2523 | Major groove platform | geometric IL_3OXE_003 IL_48076.7 | |
| IL_5NJT_163 | 1/U/2488:2490, 1/U/2518:2522 | Major groove minor groove platform with extra cWW | homologous IL_7RQB_094 NA | |
| IL_5NJT_164 | 1/U/2495:2499, 1/U/2509:2513 | Double sheared with non-canonical cWW | homologous IL_4WF9_093 IL_87767.1 | |
| IL_5NJT_165 | 1/U/2536:2537, 1/U/2609:2611 | Major groove platform | homologous IL_4WF9_094 IL_46637.1 | |
| IL_5NJT_166 | 1/U/2539:2542, 1/U/2600:2607 | No text annotation | ||
| IL_5NJT_198 | 1/U/2551:2552, 1/U/2569:2572 | Major groove platform with intercalation | homologous IL_4WF9_097 IL_94991.1 | |
| IL_5NJT_168 | 1/U/2620:2621, 1/U/2630:2632 | Single bulged A | homologous IL_7RQB_101 NA | |
| IL_5NJT_169 | 1/U/2665:2669, 1/U/2803:2811 | tSH-tHS-tHW | homologous IL_7RQB_102 NA | |
| IL_5NJT_170 | 1/U/2681:2687, 1/U/2692:2697 | Sarcin-Ricin target in LSU H95; G-bulge | homologous IL_7RQB_103 NA | |
| IL_5NJT_171 | 1/U/2709:2713, 1/U/2754:2756 | C-loop | homologous IL_7RQB_104 NA | |
| IL_5NJT_172 | 1/U/2716:2720, 1/U/2747:2751 | UAA/GAN related, with intercalation | homologous IL_4WF9_102 IL_82016.1 | |
| IL_5NJT_173 | 1/U/2724:2725, 1/U/2740:2743 | Multiple bulged bases | homologous IL_4WF9_103 IL_44609.1 | |
| IL_5NJT_196 | 1/U/2766:2771, 1/U/2791:2796 | UAA/GAN with extra cWW | homologous IL_7A0S_098 IL_91079.1 | |
| IL_5NJT_175 | 1/U/2863:2864, 1/U/2903:2905 | Major groove intercalation | homologous IL_5J7L_352 NA | |
| IL_5NJT_176 | 1/U/2868:2870, 1/U/2896:2899 | No text annotation | homologous IL_4WF9_107 IL_05502.1 | |
| IL_5NJT_177 | 1/U/2872:2877, 1/U/2890:2894 | tHS double platform | homologous IL_4WF9_108 IL_48489.1 | |
| IL_5NJT_179 | 1/V/21:27, 1/V/53:58 | No text annotation | ||
| IL_5NJT_180 | 1/V/28:29, 1/V/49:52 | Major groove minor groove platform; mini C-loop | homologous IL_7RQB_113 NA | |
| IL_5NJT_181 | 1/V/32:36, 1/V/42:46 | Symmetric double minor groove platform | geometric IL_5NS3_002 IL_58103.12 | |
| IL_5NJT_182 | 1/V/69:77, 1/V/95:103 | Bacterial 5S Loop E | homologous IL_7RQB_115 NA | |
| IL_5NJT_183 | 1/V/78:80, 1/V/92:94 | Isolated non-canonical cWW pair | geometric IL_7A0S_107 IL_71625.1 |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_5NJT_006 | Tandem non-canonical cWW pairs | ||
| IL_5NJT_184 | Partly complementary | ||
| IL_5NJT_007 | Double sheared with non-canonical cWW | ||
| IL_5NJT_012 | No text annotation | ||
| IL_5NJT_026 | Single bulged U | ||
| IL_5NJT_031 | No text annotation | ||
| IL_5NJT_187 | Isolated non-canonical cWW pair | ||
| IL_5NJT_041 | Single stack bend | ||
| IL_5NJT_042 | No text annotation | ||
| IL_5NJT_048 | Minor groove platform | ||
| IL_5NJT_049 | Minor groove platform | ||
| IL_5NJT_050 | No text annotation | ||
| IL_5NJT_188 | Double sheared | ||
| IL_5NJT_053 | Double sheared with non-canonical cWW | ||
| IL_5NJT_095 | Isolated cWS basepair | ||
| IL_5NJT_096 | Double sheared with non-canonical cWW | ||
| IL_5NJT_097 | Single bulged A | ||
| IL_5NJT_107 | No text annotation | ||
| IL_5NJT_108 | No text annotation | ||
| IL_5NJT_118 | Minor groove platform related | ||
| IL_5NJT_192 | Isolated non-canonical cWW with bulges | ||
| IL_5NJT_129 | UAA/GAN variation | ||
| IL_5NJT_193 | No text annotation | ||
| IL_5NJT_195 | Isolated non-canonical cWW with bulges | ||
| IL_5NJT_152 | No text annotation | ||
| IL_5NJT_153 | No text annotation | ||
| IL_5NJT_154 | No text annotation | ||
| IL_5NJT_155 | Kink-turn | ||
| IL_5NJT_167 | No text annotation | ||
| IL_5NJT_174 | No text annotation | ||
| IL_5NJT_178 | Major groove intercalation | ||
| IL_5NJT_197 | No text annotation |
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| J3_5NJT_001 | 1/A/48:49, 1/A/369:375, 1/A/401:403 | No text annotation | homologous J3_5J7L_001 NA | |
| J3_5NJT_002 | 1/A/595:597, 1/A/660:663, 1/A/763:764 | No text annotation | homologous J3_5J7L_002 NA | |
| J3_5NJT_027 | 1/A/595:597, 1/A/660:664, 1/A/760:764 | No text annotation | homologous J3_5J7L_051 NA | |
| J3_5NJT_003 | 1/A/681:682, 1/A/726:734, 1/A/741:743 | No text annotation | homologous J3_5J7L_003 NA | |
| J3_5NJT_004 | 1/A/835:838, 1/A/867:871, 1/A/878:884 | No text annotation | homologous J3_4LFB_001 J3_02285.1 | |
| J3_5NJT_028 | 1/A/946:949, 1/A/1353:1359, 1/A/1381:1388 | No text annotation | homologous J3_4LFB_002 J3_85722.1 | |
| J3_5NJT_006 | 1/A/965:972, 1/A/983:994, 1/A/1230:1234 | No text annotation | homologous J3_5J7L_006 NA | |
| J3_5NJT_007 | 1/A/1000:1003, 1/A/1055:1057, 1/A/1219:1224 | No text annotation | homologous J3_5J7L_007 NA | |
| J3_5NJT_029 | 1/A/1000:1007, 1/A/1054:1057, 1/A/1219:1224 | No text annotation | homologous J3_5J7L_053 NA | |
| J3_5NJT_008 | 1/A/1073:1078, 1/A/1117:1123, 1/A/1196:1202 | No text annotation | homologous J3_4LFB_007 J3_01343.1 | |
| J3_5NJT_030 | 1/A/1083:1084, 1/A/1093:1096, 1/A/1109:1112 | No text annotation | homologous J3_4LFB_017 J3_11018.1 | |
| J3_5NJT_010 | 1/A/1126:1128, 1/A/1164:1167, 1/A/1190:1193 | No text annotation | homologous J3_5J7L_010 NA | |
| J3_5NJT_039 | 1/A/1126:1128, 1/A/1164:1170, 1/A/1184:1193 | No text annotation | homologous J3_5J7L_054 NA | |
| J3_5NJT_011 | 1/A/1246:1250, 1/A/1305:1312, 1/A/1343:1346 | No text annotation | homologous J3_5J7L_011 NA | |
| J3_5NJT_012 | 1/U/30:31, 1/U/521:528, 1/U/555:556 | No text annotation | homologous J3_5J7L_036 NA | |
| J3_5NJT_033 | 1/U/30:31, 1/U/521:531, 1/U/542:556 | No text annotation | homologous J3_4WF9_011 J3_17917.1 | |
| J3_5NJT_034 | 1/U/32:35, 1/U/492:508, 1/U/515:520 | No text annotation | homologous J3_9DFE_003 J3_07616.1 | |
| J3_5NJT_013 | 1/U/56:67, 1/U/74:76, 1/U/109:113 | No text annotation | homologous J3_4WF9_001 J3_47707.1 | |
| J3_5NJT_014 | 1/U/272:276, 1/U/295:302, 1/U/416:417 | No text annotation | homologous J3_7A0S_003 J3_97971.2 | |
| J3_5NJT_015 | 1/U/730:736, 1/U/820:822, 1/U/838:841 | No text annotation | homologous J3_5J7L_038 NA | |
| J3_5NJT_016 | 1/U/745:747, 1/U/779:783, 1/U/807:810 | No text annotation | homologous J3_7RQB_005 NA | |
| J3_5NJT_017 | 1/U/1101:1103, 1/U/1127:1133, 1/U/1148:1150 | No text annotation | homologous J3_5J7L_040 NA | |
| J3_5NJT_018 | 1/U/1337:1342, 1/U/1670:1672, 1/U/1684:1687 | No text annotation | homologous J3_7A0S_006 J3_32852.7 | |
| J3_5NJT_019 | 1/U/1344:1348, 1/U/1650:1656, 1/U/1665:1668 | No text annotation | homologous J3_4WF9_005 J3_68164.1 | |
| J3_5NJT_020 | 1/U/1383:1389, 1/U/1420:1424, 1/U/1441:1442 | No text annotation | homologous J3_7RQB_009 NA | |
| J3_5NJT_036 | 1/U/1470:1475, 1/U/1612:1613, 1/U/1616:1622 | No text annotation | homologous J3_4WF9_017 J3_34864.3 | |
| J3_5NJT_037 | 1/U/2120:2122, 1/U/2225:2230, 1/U/2251:2257 | No text annotation | homologous J3_4WF9_007 J3_07703.1 | |
| J3_5NJT_038 | 1/U/2311:2313, 1/U/2413:2424, 1/U/2450:2456 | No text annotation | homologous J3_5J7L_070 NA | |
| J3_5NJT_022 | 1/U/2324:2326, 1/U/2350:2352, 1/U/2361:2366 | No text annotation | homologous J3_4WF9_008 J3_05327.1 | |
| J3_5NJT_023 | 1/U/2546:2549, 1/U/2574:2576, 1/U/2590:2596 | No text annotation | homologous J3_7RQB_012 NA | |
| J3_5NJT_024 | 1/U/2818:2820, 1/U/2831:2836, 1/U/2914:2918 | No text annotation | homologous J3_7A0S_012 J3_20574.1 | |
| J3_5NJT_025 | 1/U/2839:2840, 1/U/2856:2861, 1/U/2907:2911 | No text annotation | homologous J3_4WF9_021 J3_76911.2 | |
| J3_5NJT_026 | 1/V/9:14, 1/V/66:68, 1/V/104:107 | No text annotation | ||
| J4_5NJT_001 | 1/A/113:121, 1/A/246:248, 1/A/294:297, 1/A/319:320 | No text annotation | ||
| J4_5NJT_015 | 1/A/141:143, 1/A/177:183, 1/A/206:212, 1/A/227:229 | No text annotation | homologous J4_5J7L_002 NA | |
| J4_5NJT_003 | 1/A/584:586, 1/A/773:778, 1/A/819:830, 1/A/889:890 | No text annotation | homologous J4_6CZR_013 NA | |
| J4_5NJT_004 | 1/U/271:272, 1/U/417:422, 1/U/446:453, 1/U/468:471 | No text annotation | homologous J4_4WF9_001 J4_94698.1 | |
| J4_5NJT_005 | 1/U/340:344, 1/U/360:363, 1/U/367:369, 1/U/381:385 | No text annotation | homologous J4_9DFE_002 J4_16174.1 | |
| J4_5NJT_006 | 1/U/645:648, 1/U/670:674, 1/U/681:684, 1/U/696:703 | No text annotation | homologous J4_5J7L_020 NA | |
| J4_5NJT_007 | 1/U/1310:1315, 1/U/1333:1334, 1/U/1690:1693, 1/U/2038:2039 | No text annotation | homologous J4_4WF9_004 J4_64571.6 | |
| J4_5NJT_008 | 1/U/1349:1353, 1/U/1377:1382, 1/U/1443:1444, 1/U/1642:1649 | No text annotation | homologous J4_4WF9_005 J4_77353.1 | |
| J4_5NJT_009 | 1/U/1352:1353, 1/U/1377:1382, 1/U/1443:1444, 1/U/1642:1648 | No text annotation | homologous J4_4WF9_006 J4_48150.1 | |
| J4_5NJT_011 | 1/U/1801:1805, 1/U/1817:1821, 1/U/1856:1859, 1/U/2004:2008 | No text annotation | homologous J4_5J7L_025 NA | |
| J4_5NJT_012 | 1/U/1862:1864, 1/U/1934:1935, 1/U/1953:1962, 1/U/1996:2001 | No text annotation | homologous J4_9DFE_008 J4_42306.1 | |
| J4_5NJT_013 | 1/U/2314:2318, 1/U/2372:2376, 1/U/2399:2401, 1/U/2410:2412 | No text annotation | homologous J4_9DFE_009 J4_98139.1 | |
| J4_5NJT_014 | 1/U/2672:2675, 1/U/2703:2705, 1/U/2760:2764, 1/U/2798:2800 | No text annotation | homologous J4_9DFE_010 J4_77044.5 | |
| J5_5NJT_001 | 1/A/38:41, 1/A/411:414, 1/A/444:447, 1/A/507:509, 1/A/554:557 | No text annotation | ||
| J5_5NJT_002 | 1/A/60:63, 1/A/104:111, 1/A/322:324, 1/A/345:347, 1/A/358:362 | No text annotation | homologous J5_5J7L_003 NA | |
| J5_5NJT_003 | 1/U/47:54, 1/U/115:120, 1/U/129:130, 1/U/149:151, 1/U/178:180 | No text annotation | homologous J5_9DFE_001 J5_27223.1 | |
| J5_5NJT_004 | 1/U/271:276, 1/U/295:302, 1/U/416:422, 1/U/446:453, 1/U/468:471 | No text annotation | ||
| J5_5NJT_005 | 1/U/577:579, 1/U/604:608, 1/U/621:623, 1/U/1301:1302, 1/U/2046:2047 | No text annotation | homologous J5_4WF9_003 J5_43153.6 | |
| J5_5NJT_006 | 1/U/628:633, 1/U/715:718, 1/U/856:859, 1/U/1236:1237, 1/U/1290:1296 | No text annotation | homologous J5_7A0S_004 J5_74302.6 | |
| J5_5NJT_007 | 1/U/1719:1727, 1/U/1751:1752, 1/U/1780:1781, 1/U/1785:1793, 1/U/2017:2019 | No text annotation | homologous J5_4WF9_005 J5_99177.1 | |
| J5_5NJT_008 | 1/U/2086:2093, 1/U/2475:2482, 1/U/2529:2536, 1/U/2611:2617, 1/U/2635:2640 | No text annotation | ||
| J5_5NJT_009 | 1/U/2103:2106, 1/U/2272:2275, 1/U/2287:2288, 1/U/2310:2311, 1/U/2456:2464 | No text annotation | homologous J5_4WF9_007 J5_39529.2 | |
| J6_5NJT_001 | 1/U/45:46, 1/U/181:186, 1/U/218:227, 1/U/234:238, 1/U/265:269, 1/U/473:480 | No text annotation | ||
| J7_5NJT_001 | 1/U/8:15, 1/U/571:577, 1/U/2047:2052, 1/U/2069:2072, 1/U/2654:2659, 1/U/2817:2818, 1/U/2918:2919 | No text annotation | ||
| J7_5NJT_002 | 1/U/864:869, 1/U/882:883, 1/U/989:992, 1/U/1017:1022, 1/U/1033:1037, 1/U/1209:1210, 1/U/1226:1231 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| J3_5NJT_005 | No text annotation | ||
| J3_5NJT_009 | No text annotation | ||
| J3_5NJT_031 | No text annotation | ||
| J3_5NJT_032 | No text annotation | ||
| J3_5NJT_035 | No text annotation | ||
| J3_5NJT_021 | No text annotation | ||
| J4_5NJT_002 | No text annotation | ||
| J4_5NJT_010 | No text annotation |
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