HL_5NJT_041

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

5NJT|1|U|A|355

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_041 not in the Motif Atlas

Homologous match to HL_5J7L_142

Geometric discrepancy: 0.1863

The information below is about HL_5J7L_142

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

5NJT|1|U|C|349
5NJT|1|U|U|350
5NJT|1|U|G|351
5NJT|1|U|G|352
5NJT|1|U|A|353
5NJT|1|U|A|354
5NJT|1|U|A|355
5NJT|1|U|G|356

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain n

50S ribosomal protein L24