HL_5NJT_043
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUAACAGCC
- Length
- 9 nucleotides
- Bulged bases
- 5NJT|1|U|A|373, 5NJT|1|U|A|374, 5NJT|1|U|C|375
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_043 not in the Motif Atlas
- Homologous match to HL_7RQB_012
- Geometric discrepancy: 0.1755
- The information below is about HL_7RQB_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_08002.9
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 19
Unit IDs
5NJT|1|U|G|371
5NJT|1|U|U|372
5NJT|1|U|A|373
5NJT|1|U|A|374
5NJT|1|U|C|375
5NJT|1|U|A|376
5NJT|1|U|G|377
5NJT|1|U|C|378
5NJT|1|U|C|379
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain Y
- 50S ribosomal protein L4
- Chain n
- 50S ribosomal protein L24
Coloring options: