HL_5NJT_046

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_046 not in the Motif Atlas

Homologous match to HL_4WF9_015

Geometric discrepancy: 0.145

The information below is about HL_4WF9_015

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.4

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

399

Unit IDs

5NJT|1|U|C|509
5NJT|1|U|G|510
5NJT|1|U|U|511
5NJT|1|U|G|512
5NJT|1|U|A|513
5NJT|1|U|G|514

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain Y

50S ribosomal protein L4

Chain r

50S ribosomal protein L34