HL_5NJT_048

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGUUAACG

Length

8 nucleotides

Bulged bases

5NJT|1|U|U|591, 5NJT|1|U|C|594

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_048 not in the Motif Atlas

Homologous match to HL_4WF9_017

Geometric discrepancy: 0.2324

The information below is about HL_4WF9_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_50318.1

Basepair signature

cWW-cSH-F-F

Number of instances in this motif group

1

Unit IDs

5NJT|1|U|C|588
5NJT|1|U|G|589
5NJT|1|U|U|590
5NJT|1|U|U|591
5NJT|1|U|A|592
5NJT|1|U|A|593
5NJT|1|U|C|594
5NJT|1|U|G|595

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L13

Chain k

50S ribosomal protein L21