HL_5NJT_054
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CGUUGAAAAG
- Length
- 10 nucleotides
- Bulged bases
- 5NJT|1|U|U|794, 5NJT|1|U|A|798, 5NJT|1|U|A|799
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_054 not in the Motif Atlas
- Homologous match to HL_7A0S_022
- Geometric discrepancy: 0.1326
- The information below is about HL_7A0S_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_50204.2
- Basepair signature
- cWW-cWS-tSW-F-F
- Number of instances in this motif group
- 12
Unit IDs
5NJT|1|U|C|791
5NJT|1|U|G|792
5NJT|1|U|U|793
5NJT|1|U|U|794
5NJT|1|U|G|795
5NJT|1|U|A|796
5NJT|1|U|A|797
5NJT|1|U|A|798
5NJT|1|U|A|799
5NJT|1|U|G|800
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain X
- 50S ribosomal protein L3
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
- Chain r
- 50S ribosomal protein L34
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