HL_5NJT_063

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGGAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_063 not in the Motif Atlas

Homologous match to HL_7A0S_031

Geometric discrepancy: 0.1882

The information below is about HL_7A0S_031

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

5NJT|1|U|C|1262
5NJT|1|U|G|1263
5NJT|1|U|G|1264
5NJT|1|U|A|1265
5NJT|1|U|A|1266
5NJT|1|U|G|1267

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain e

50S ribosomal protein L15

Chain j

50S ribosomal protein L20

Chain k

50S ribosomal protein L21