HL_5NJT_064
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GUGAGAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_064 not in the Motif Atlas
- Homologous match to HL_4WF9_032
- Geometric discrepancy: 0.1732
- The information below is about HL_4WF9_032
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.3
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 135
Unit IDs
5NJT|1|U|G|1320
5NJT|1|U|U|1321
5NJT|1|U|G|1322
5NJT|1|U|A|1323
5NJT|1|U|G|1324
5NJT|1|U|A|1325
5NJT|1|U|A|1326
5NJT|1|U|U|1327
5NJT|1|U|C|1328
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
- Chain l
- 50S ribosomal protein L22
- Chain p
- 50S ribosomal protein L32
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