HL_5NJT_068
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- GGUAUUGGAUAU
- Length
- 12 nucleotides
- Bulged bases
- 5NJT|1|U|A|1499, 5NJT|1|U|U|1500, 5NJT|1|U|A|1506
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_068 not in the Motif Atlas
- Geometric match to HL_5J7L_200
- Geometric discrepancy: 0.2854
- The information below is about HL_5J7L_200
- Detailed Annotation
- UNCG variation
- Broad Annotation
- UNCG variation
- Motif group
- HL_08100.1
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
5NJT|1|U|G|1496
5NJT|1|U|G|1497
5NJT|1|U|U|1498
5NJT|1|U|A|1499
5NJT|1|U|U|1500
5NJT|1|U|U|1501
5NJT|1|U|G|1502
5NJT|1|U|G|1503
5NJT|1|U|A|1504
5NJT|1|U|U|1505
5NJT|1|U|A|1506
5NJT|1|U|U|1507
Current chains
- Chain U
- 23S ribosomal RNA
Nearby chains
- Chain g
- 50S ribosomal protein L17
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