HL_5NJT_069

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

5NJT|1|U|C|1539, 5NJT|1|U|U|1543

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_069 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1764

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

5NJT|1|U|G|1538
5NJT|1|U|C|1539
5NJT|1|U|A|1540
5NJT|1|U|A|1541
5NJT|1|U|A|1542
5NJT|1|U|U|1543
5NJT|1|U|C|1544

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain W

50S ribosomal protein L2