HL_5NJT_072

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

5NJT|1|U|A|1659, 5NJT|1|U|A|1661, 5NJT|1|U|A|1663

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_072 not in the Motif Atlas

Homologous match to HL_7RQB_040

Geometric discrepancy: 0.1445

The information below is about HL_7RQB_040

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64430.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

13

Unit IDs

5NJT|1|U|C|1657
5NJT|1|U|G|1658
5NJT|1|U|A|1659
5NJT|1|U|C|1660
5NJT|1|U|A|1661
5NJT|1|U|C|1662
5NJT|1|U|A|1663
5NJT|1|U|G|1664

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain l

50S ribosomal protein L22

Chain r

50S ribosomal protein L34