HL_5NJT_081

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GGUAAGUUC

Length

9 nucleotides

Bulged bases

5NJT|1|U|U|1984

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_081 not in the Motif Atlas

Homologous match to HL_4WF9_046

Geometric discrepancy: 0.1392

The information below is about HL_4WF9_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_61418.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

8

Unit IDs

5NJT|1|U|G|1978
5NJT|1|U|G|1979
5NJT|1|U|U|1980
5NJT|1|U|A|1981
5NJT|1|U|A|1982
5NJT|1|U|G|1983
5NJT|1|U|U|1984
5NJT|1|U|U|1985
5NJT|1|U|C|1986

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain A

Small subunit ribosomal RNA; SSU rRNA

Chain d

50S ribosomal protein L14