HL_5NJT_082

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

GUGAAGAUGC

Length

10 nucleotides

Bulged bases

5NJT|1|U|A|2059, 5NJT|1|U|A|2060, 5NJT|1|U|G|2061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_082 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.2188

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.1

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

10

Unit IDs

5NJT|1|U|G|2056
5NJT|1|U|U|2057
5NJT|1|U|G|2058
5NJT|1|U|A|2059
5NJT|1|U|A|2060
5NJT|1|U|G|2061
5NJT|1|U|A|2062
5NJT|1|U|U|2063
5NJT|1|U|G|2064
5NJT|1|U|C|2065

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain k

50S ribosomal protein L21

Chain p

50S ribosomal protein L32