HL_5NJT_090

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_090 not in the Motif Atlas

Homologous match to HL_7RQB_058

Geometric discrepancy: 0.1874

The information below is about HL_7RQB_058

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

5NJT|1|U|C|2403
5NJT|1|U|G|2404
5NJT|1|U|A|2405
5NJT|1|U|A|2406
5NJT|1|U|A|2407
5NJT|1|U|G|2408

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain h

50S ribosomal protein L18

Chain q

50S ribosomal protein L33 1