HL_5NJT_100

3D structure

PDB id

5NJT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.8 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

5NJT|1|U|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NJT_100 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1053

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

5NJT|1|U|A|2844
5NJT|1|U|A|2845
5NJT|1|U|A|2846
5NJT|1|U|G|2847
5NJT|1|U|A|2848
5NJT|1|U|U|2849
5NJT|1|U|G|2850
5NJT|1|U|A|2851
5NJT|1|U|U|2852

Current chains

Chain U

23S ribosomal RNA

Nearby chains

Chain X

50S ribosomal protein L3

Chain g

50S ribosomal protein L17