HL_5NJT_102
3D structure
- PDB id
- 5NJT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis hibernating 100S ribosome reveals the basis for 70S dimerization.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.8 Å
Loop
- Sequence
- CAUACCG
- Length
- 7 nucleotides
- Bulged bases
- 5NJT|1|V|A|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NJT_102 not in the Motif Atlas
- Homologous match to HL_5J7L_203
- Geometric discrepancy: 0.2833
- The information below is about HL_5J7L_203
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
5NJT|1|V|C|36
5NJT|1|V|A|37
5NJT|1|V|U|38
5NJT|1|V|A|39
5NJT|1|V|C|40
5NJT|1|V|C|41
5NJT|1|V|G|42
Current chains
- Chain V
- 5S ribosomal RNA
Nearby chains
- Chain U
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 50S ribosomal protein L5
- Chain h
- 50S ribosomal protein L18
- Chain y
- 50S ribosomal protein L31
Coloring options: