HL_5NO2_033

3D structure

PDB id

5NO2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

CCUUCGGG

Length

8 nucleotides

Bulged bases

5NO2|1|A|U|209

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_5NO2_033 not in the Motif Atlas

Geometric match to HL_8H9D_001

Geometric discrepancy: 0.2574

The information below is about HL_8H9D_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.1

Basepair signature

cWW-F

Number of instances in this motif group

8

Unit IDs

5NO2|1|A|C|206
5NO2|1|A|C|207
5NO2|1|A|U|208
5NO2|1|A|U|209
5NO2|1|A|C|210
5NO2|1|A|G|211
5NO2|1|A|G|212
5NO2|1|A|G|213

Current chains

Chain A

16S ribosomal RNA

Nearby chains