HL_5NO2_035
3D structure
- PDB id
- 5NO2 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 5.16 Å
Loop
- Sequence
- UUCAGAGAUGAG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_5NO2_035 not in the Motif Atlas
- Homologous match to HL_5J7L_216
- Geometric discrepancy: 0.2049
- The information below is about HL_5J7L_216
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78284.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 2
Unit IDs
5NO2|1|A|U|1009
5NO2|1|A|U|1010
5NO2|1|A|C|1011
5NO2|1|A|A|1012
5NO2|1|A|G|1013
5NO2|1|A|A|1014
5NO2|1|A|G|1015
5NO2|1|A|A|1016
5NO2|1|A|U|1017
5NO2|1|A|G|1018
5NO2|1|A|A|1019
5NO2|1|A|G|1020
Current chains
- Chain A
- 16S ribosomal RNA
Nearby chains
- Chain N
- 30S ribosomal protein S14
- Chain S
- 30S ribosomal protein S19
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