HL_5NO3_001

3D structure

PDB id

5NO3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

RsgA-GDPNP bound to the 30S ribosomal subunit (RsgA assembly intermediate without uS3)

Experimental method

ELECTRON MICROSCOPY

Resolution

5.16 Å

Loop

Sequence

GUUUGAUCAUGGC

Length

13 nucleotides

Bulged bases

5NO3|1|A|U|14

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

5NO3|1|A|G|11
5NO3|1|A|U|12
5NO3|1|A|U|13
5NO3|1|A|U|14
5NO3|1|A|G|15
5NO3|1|A|A|16
5NO3|1|A|U|17
5NO3|1|A|C|18
5NO3|1|A|A|19
5NO3|1|A|U|20
5NO3|1|A|G|21
5NO3|1|A|G|22
5NO3|1|A|C|23

Current chains

Chain A

16S ribosomal RNA

Nearby chains

Chain E

30S ribosomal protein S5

Chain L

30S ribosomal protein S12